Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N18
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical pr...    29   0.50 
U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical pr...    29   0.50 
U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical pr...    29   0.50 
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    29   0.50 
AF043699-4|AAB97568.1|  610|Caenorhabditis elegans Serotonin/oct...    28   1.2  
AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    27   2.0  
L23645-5|AAK26136.1|   71|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    25   8.1  

>U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical
           protein R11G1.6c protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 VSTPLECTAKYQ*VYSGSIIREPVPLGNCVYRHGPHSHLT 294
           V++P +C   ++     S + +P  + N    HGP  HLT
Sbjct: 89  VTSPTKCEVLFEGFGDHSDVLQPPKISNVRVEHGPRDHLT 128


>U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical
           protein R11G1.6d protein.
          Length = 809

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 VSTPLECTAKYQ*VYSGSIIREPVPLGNCVYRHGPHSHLT 294
           V++P +C   ++     S + +P  + N    HGP  HLT
Sbjct: 89  VTSPTKCEVLFEGFGDHSDVLQPPKISNVRVEHGPRDHLT 128


>U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical
           protein R11G1.6b protein.
          Length = 901

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 VSTPLECTAKYQ*VYSGSIIREPVPLGNCVYRHGPHSHLT 294
           V++P +C   ++     S + +P  + N    HGP  HLT
Sbjct: 179 VTSPTKCEVLFEGFGDHSDVLQPPKISNVRVEHGPRDHLT 218


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 175 VSTPLECTAKYQ*VYSGSIIREPVPLGNCVYRHGPHSHLT 294
           V++P +C   ++     S + +P  + N    HGP  HLT
Sbjct: 179 VTSPTKCEVLFEGFGDHSDVLQPPKISNVRVEHGPRDHLT 218


>AF043699-4|AAB97568.1|  610|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 3 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 143 WLGILQLCPPGYLLPSSVRPNTN--RCIPA 226
           W+G   +C P + L SS++      RC PA
Sbjct: 184 WIGSFLICSPSFFLASSIKDKETPCRCTPA 213


>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 230 MLPEYTYWYLAVHSRGVDTQAGIIVKCPTTMLWFPHDIFLHRKLR 96
           ML  Y + Y   H+ G+D    +I+ C T  L     IFL  K+R
Sbjct: 693 MLNAYMWMYAGDHTGGIDVPPLLIIMCNTCKLL----IFLLEKIR 733


>L23645-5|AAK26136.1|   71|Caenorhabditis elegans Hypothetical
           protein F54F2.6 protein.
          Length = 71

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 236 RMMLPEYTYWYLAVHSRGVDTQAG 165
           RMMLP Y   Y+ V + G + +AG
Sbjct: 5   RMMLPHYVRVYVCVRTDGENEKAG 28


>Z68880-8|CAJ43445.1|  883|Caenorhabditis elegans Hypothetical
           protein T14G10.5b protein.
          Length = 883

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 292 LSDYVVHDGKHNCLEVLVLE*CCRNT 215
           +++Y VH  KH     +VL+  C+NT
Sbjct: 649 IAEYTVHMIKHTFANAMVLQFECKNT 674


>Z68880-7|CAA93095.1|  870|Caenorhabditis elegans Hypothetical
           protein T14G10.5a protein.
          Length = 870

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 292 LSDYVVHDGKHNCLEVLVLE*CCRNT 215
           +++Y VH  KH     +VL+  C+NT
Sbjct: 636 IAEYTVHMIKHTFANAMVLQFECKNT 661


>U41557-4|AAA83305.1|  298|Caenorhabditis elegans Hypothetical
           protein C50F7.9 protein.
          Length = 298

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 102 LTVKENIVRKP*HGGWAFYNYAR 170
           LT+K+N+  +  H GW   +YAR
Sbjct: 153 LTLKQNVSSQARHLGWGVDHYAR 175


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 233 MMLPEYTYWYLAVHSRGVDTQAGIIVKCPTTMLWF 129
           M LP Y +     HS    T+ GI+   PT  LWF
Sbjct: 317 MFLPSYLHDVHHYHS----TENGILSALPTVSLWF 347


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 233 MMLPEYTYWYLAVHSRGVDTQAGIIVKCPTTMLWF 129
           M LP Y +     HS    T+ GI+   PT  LWF
Sbjct: 303 MFLPSYLHDVHHYHS----TENGILSALPTVSLWF 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,201
Number of Sequences: 27780
Number of extensions: 157354
Number of successful extensions: 335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)