Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N14
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640...    27   8.8  
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544...    27   8.8  
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    27   8.8  
03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    27   8.8  

>09_02_0577 -
           10862976-10863215,10863653-10863788,10863906-10864030,
           10864132-10864516,10864571-10864798,10864976-10865319
          Length = 485

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 402 TLLVINNMNCINIKLVLYSINILWQSLSTLRLSS 301
           +L +  N+  + + L+L+S NI+W++ S   ++S
Sbjct: 183 SLFIATNICLLLVNLLLHSENIIWKAFSPTTINS 216


>09_02_0576 -
           10853361-10853600,10854033-10854168,10854285-10854409,
           10854487-10854871,10854934-10855161,10855332-10855675
          Length = 485

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -3

Query: 402 TLLVINNMNCINIKLVLYSINILWQSLSTLRLSS 301
           +L +  N+  + + L+L+S NI+W++ S   ++S
Sbjct: 183 SLFIATNICLLLVNLLLHSENIIWKAFSPTTINS 216


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 195 KLNLLEFHNNSVIKLKIRMY-LISYITPGPSYKHNLMMIVSTLINFAKEY*YYI 353
           ++ + + H  SVI L  R   L+    P   ++H L  ++  L N   +Y YYI
Sbjct: 385 RMKIDDGHELSVIFLDSRAERLLPCFVPNTGWRHCLCSLIDLLENSVTKYKYYI 438


>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -3

Query: 399 LLVINNMNCINIKLVLYSINILWQSLSTLRLSS*DCVY 286
           +++I  +    + L+++ INILW +L  +  +S + VY
Sbjct: 458 VMIITTLLMTIVMLLVWKINILWVALFFITFTSTEAVY 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,715
Number of Sequences: 37544
Number of extensions: 165290
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)