Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N14
         (509 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208856-1|BAD92093.1| 1155|Homo sapiens IQ motif containing GTP...    29   7.1  
U51903-1|AAB37765.1| 1575|Homo sapiens RasGAP-related protein pr...    29   9.4  
AY351902-1|AAQ81291.1| 1071|Homo sapiens testis specific IQ moti...    29   9.4  

>AB208856-1|BAD92093.1| 1155|Homo sapiens IQ motif containing GTPase
           activating protein 2 variant protein.
          Length = 1155

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 66  GLSKTFSYLF*RENFFSIFEPILAVGKTYRFALPML*HRPYISKLNLLEFHNNSVIKLK 242
           G  +   Y+  R+ F    + I+ +   +R A      + Y+S+L     HNN ++K++
Sbjct: 283 GYKQRKEYMHRRQTFIDNTDSIVKIQSWFRMATA---RKSYLSRLQYFRDHNNEIVKIQ 338


>U51903-1|AAB37765.1| 1575|Homo sapiens RasGAP-related protein
           protein.
          Length = 1575

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 66  GLSKTFSYLF*RENFFSIFEPILAVGKTYRFALPML*HRPYISKLNLLEFHNNSVIKLK 242
           G  +   Y+  R+ F    + ++ +   +R A      + Y+S+L     HNN ++K++
Sbjct: 703 GYKQRKEYMHRRQTFIDNTDSVVKIQSWFRMATA---RKSYLSRLQYFRDHNNEIVKIQ 758


>AY351902-1|AAQ81291.1| 1071|Homo sapiens testis specific IQ motif
           containing GTPase activating protein 2 protein.
          Length = 1071

 Score = 29.1 bits (62), Expect = 9.4
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +3

Query: 66  GLSKTFSYLF*RENFFSIFEPILAVGKTYRFALPML*HRPYISKLNLLEFHNNSVIKLK 242
           G  +   Y+  R+ F    + ++ +   +R A      + Y+S+L     HNN ++K++
Sbjct: 199 GYKQRKEYMHRRQTFIDNTDSVVKIQSWFRMATA---RKSYLSRLQYFRDHNNEIVKIQ 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,440,415
Number of Sequences: 237096
Number of extensions: 1038392
Number of successful extensions: 1086
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)