Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N13
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 79 1e-15
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 77 4e-15
04_03_0901 + 20699814-20701169 29 1.1
11_01_0282 + 2093451-2094668 28 2.4
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 28 3.2
02_03_0333 + 17843605-17843661,17843713-17843881,17845606-178457... 27 5.6
11_06_0144 - 20608382-20610277 27 7.5
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 7.5
11_05_0086 + 18964493-18965737,18965896-18966360 26 9.9
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 9.9
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 26 9.9
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 26 9.9
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 79.0 bits (186), Expect = 1e-15
Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 21 MTLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRL*RQAG 200
M N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV + + G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 201 LPYETGSPD*QPSTSLDVKRALLATDHVVTVRGNASLFEV--AYVDANLSVLALVIVRKG 374
P + G L + R G V V +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLT-SGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 375 AQEIPGLTD 401
++PGLTD
Sbjct: 120 DNDLPGLTD 128
Score = 48.4 bits (110), Expect = 2e-06
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = +1
Query: 163 MFSDVAGCDDKQGFPMKQGVLTNSRVRLLMSKG 261
+F + GCD KQGFPMKQGVLT+ RVRLL+ +G
Sbjct: 49 VFKIMGGCD-KQGFPMKQGVLTSGRVRLLLHRG 80
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 257 KGTTCY*P--RRDG*RKRKSVRGSI 325
+GT C+ RRDG R+RKSVRG I
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCI 103
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 77.4 bits (182), Expect = 4e-15
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Frame = +3
Query: 21 MTLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRCCRL*RQAG 200
M N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV + + G
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 201 LPYETGSPD*QPSTSLDVKRALLATDHVVTVRGNASLFEV--AYVDANLSVLALVIVRKG 374
P + G L + R G V V +LSV+ LVIV+KG
Sbjct: 61 FPMKQGVLT-AGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
Query: 375 AQEIPGLTD 401
++PGLTD
Sbjct: 120 ENDLPGLTD 128
Score = 47.2 bits (107), Expect = 5e-06
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +1
Query: 163 MFSDVAGCDDKQGFPMKQGVLTNSRVRLLMSKG 261
+F + GCD KQGFPMKQGVLT RVRLL+ +G
Sbjct: 49 VFKIMGGCD-KQGFPMKQGVLTAGRVRLLLHRG 80
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 257 KGTTCY*P--RRDG*RKRKSVRGSI 325
+GT C+ RRDG R+RKSVRG I
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCI 103
>04_03_0901 + 20699814-20701169
Length = 451
Score = 29.5 bits (63), Expect = 1.1
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +3
Query: 195 AGLPYETGSPD*QPSTSLDVKRALLATDHVVTVRGNASLFEVAYVDANLSVLALVIVRKG 374
AGL + SPD PS +L A L+ D V NA + +A SVL RKG
Sbjct: 121 AGLVRQVASPDADPSAALRQLAAYLSDDDVDEFEKNALVGAGGAAEAVASVLR----RKG 176
Query: 375 AQEI 386
+E+
Sbjct: 177 EREV 180
>11_01_0282 + 2093451-2094668
Length = 405
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 394 SPGISCAPLRTMTRAKTERLASTYATSNRLAFPLTVTTWSV-ASSALLTSRDV 239
+PG + L+ R + +R+ S Y +TVT S+ A+ A+LT+ D+
Sbjct: 216 TPGEAHGSLQQQVRGEVQRIVSEYGGEGMPPLSITVTGHSLGAALAVLTAYDI 268
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 27.9 bits (59), Expect = 3.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 78 DEHKLRIFYEKRMGAEVDADLLG------DEWKGYVLRCCRL*RQAGLPYETGSPD*QPS 239
D+ K IF+E + AEV A+ + DEWKG+ + R + PD +P
Sbjct: 200 DDGKGDIFFETNVTAEVMAEGMALQPFSFDEWKGHRAESVKKERMKKVKITVVGPDGKPV 259
Query: 240 TSLDV 254
DV
Sbjct: 260 PEADV 264
>02_03_0333 +
17843605-17843661,17843713-17843881,17845606-17845723,
17845725-17846358,17846457-17846526,17847680-17847804,
17848146-17848270,17848638-17848730,17849714-17849753
Length = 476
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 252 HQETYSAVSQDSLFHREAL---LVVTAGNIGEHNLSIR 148
H+ Y ++QDS H+E+L L+ A + +HN +R
Sbjct: 290 HESFYFKINQDSCSHKESLESCLISAASSCEDHNHLMR 327
>11_06_0144 - 20608382-20610277
Length = 631
Score = 26.6 bits (56), Expect = 7.5
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -2
Query: 400 SVSPGISCAPLRTMTRAKTERLASTYATSNRLAFPLTVTTWSVASSALLTS 248
S S G SC+ ++ R T +A+ +S L FP + + S +SSA TS
Sbjct: 25 SESDGGSCSYRNSIQRVVTASVAAASTSSTTLVFPSSGSVTS-SSSASFTS 74
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +3
Query: 57 QKLF-EVVDEHKLRIFYEKR 113
+KL+ E+ DE KLRI YEK+
Sbjct: 494 KKLYQEIKDEEKLRILYEKK 513
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 26.2 bits (55), Expect = 9.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 168 LRCCRL*RQAGLPYETGSPD*QPSTSLDVKRALLATDHVVTVRGNASLFEVAY 326
LRCC R + G P Q R + D +T+ G ASL VAY
Sbjct: 358 LRCCHALRTVAVDASPGPPRLQAFEY----RGSVPDDTFLTIHGGASLTTVAY 406
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 75 VDEHKLRIFYEKRMGAEVDADLLGDEWKGYVL 170
++ + +RIF + + E D++ EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 57 QKLF-EVVDEHKLRIFYEKRMGAEVDADLLGDE 152
+KL+ EV +LRI YEKR+ + D+ GDE
Sbjct: 492 KKLYKEVKAGERLRIDYEKRLNHLRNQDVKGDE 524
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 198 GLPYETGSPD*QPSTSLDVKRALLATDHVVT 290
GLP + SP+ QP TSL + L ++ +T
Sbjct: 271 GLPLKANSPNMQPRTSLTYGKLLEEVNNCIT 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,957
Number of Sequences: 37544
Number of extensions: 190893
Number of successful extensions: 481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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