Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N12
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    27   9.3  
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802...    27   9.3  

>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 257 NLFLYSVAMFTLPFVAFFGVRHALIEYYHIEGFAVTAWSVLA 382
           N+F YS  +F + ++AF  V H +  Y +   +  T W  LA
Sbjct: 557 NMFWYSHHLFVIVYIAF--VVHGVCLYINRTWWKQTTWMYLA 596


>01_03_0156 +
           13279354-13279479,13279722-13279790,13280102-13280272,
           13280358-13280464,13281332-13281437,13281540-13281586,
           13283429-13283747,13283917-13284006,13284095-13284157,
           13284303-13284377,13285379-13285441,13286677-13286700,
           13286926-13286978,13287687-13287861
          Length = 495

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 7/19 (36%), Positives = 16/19 (84%)
 Frame = +3

Query: 63  EHSVKVPRHYKVASNILKQ 119
           +H +K+P ++++A N+L+Q
Sbjct: 24  DHRIKLPYYFRIAGNLLRQ 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,173
Number of Sequences: 37544
Number of extensions: 152667
Number of successful extensions: 288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)