Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N12
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interactin...    27   4.8  
U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interactin...    27   4.8  
Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p...    27   8.4  
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.      27   8.4  

>U40797-11|AAN84857.1|  313|Caenorhabditis elegans Gex interacting
           protein protein9, isoform b protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 40  RML*VKCLNTPSRYQDITKLLQIYSNRFLLKAVALKVY 153
           R L + C  TPSR  D T L     ++ ++  +ALKVY
Sbjct: 16  RELSIWCNRTPSRQNDRTTLADDSRSQRIVTELALKVY 53


>U40797-10|AAK95871.1|  617|Caenorhabditis elegans Gex interacting
           protein protein9, isoform a protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 40  RML*VKCLNTPSRYQDITKLLQIYSNRFLLKAVALKVY 153
           R L + C  TPSR  D T L     ++ ++  +ALKVY
Sbjct: 320 RELSIWCNRTPSRQNDRTTLADDSRSQRIVTELALKVY 357


>Z81520-1|CAB04223.1|  399|Caenorhabditis elegans Hypothetical
           protein F31B9.1 protein.
          Length = 399

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 48  VSKMFEHSVKVPRHYKVASNILKQVSTEGGSVKSLLYDNKLRHFN*R 188
           + K+ +HSV++P+  ++  N+L  +S+   S   ++Y    RHF  R
Sbjct: 297 LEKILDHSVQLPQWLRLLLNVLSVMSS---STNPIVYIICCRHFRLR 340


>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 22  KFVFPNRML*VKCLNTPSRYQDITKLLQIYSNRFLLKAVALKV 150
           K VF   +  ++    P  Y    K+ ++Y  RF   + ALK+
Sbjct: 662 KVVFDVIVAVLRICEEPRHYPQAAKIFEVYLKRFSFTSAALKI 704


>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical
           protein C02F4.1 protein.
          Length = 1781

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 22  KFVFPNRML*VKCLNTPSRYQDITKLLQIYSNRFLLKAVALKV 150
           K VF   +  ++    P  Y    K+ ++Y  RF   + ALK+
Sbjct: 662 KVVFDVIVAVLRICEEPRHYPQAAKIFEVYLKRFSFTSAALKI 704


>AF125463-2|AAD12867.2|  167|Caenorhabditis elegans Hypothetical
           protein Y49F6C.7 protein.
          Length = 167

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 179 QLKTMAEADESPLIPIHTKRAAFALANLFLYSVAMFTLPF 298
           +L+ + E  E+ L P+H + A+F   NLF + +    L F
Sbjct: 112 RLRVIHEGAET-LFPVHFRSASFHFENLFFFQLLYAFLQF 150


>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
          Length = 1781

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 22  KFVFPNRML*VKCLNTPSRYQDITKLLQIYSNRFLLKAVALKV 150
           K VF   +  ++    P  Y    K+ ++Y  RF   + ALK+
Sbjct: 662 KVVFDVIVAVLRICEEPRHYPQAAKIFEVYLKRFSFTSAALKI 704


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,961,530
Number of Sequences: 27780
Number of extensions: 154655
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)