Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N07
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 44 5e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.004
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 31 0.64
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 0.85
05_03_0086 + 8279518-8280320,8280923-8281844 30 0.85
12_02_0239 - 16125105-16126025,16126966-16127415 29 2.0
10_08_0009 + 14075929-14076789 29 2.0
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 2.6
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 28 4.5
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 27 6.0
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 27 6.0
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 7.9
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 27 7.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 59 LRVFLTVGGDDDTEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 223
++ L++G D+ ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 109 VKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.004
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 101 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 223
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 344 LVREMKQALNVKPNMQLVISVLPNVNCSIYFDVPSIINLVDI 469
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 155 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 268
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 30.3 bits (65), Expect = 0.85
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 119 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 295
LL++ P R AFT A + + FDG+ +W L + P + + F T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534
Query: 296 TPVDDKESEH 325
TP D K E+
Sbjct: 535 TPKDKKPPEN 544
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 254 IGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVISVLPNVNCSIY 433
+G + + + T V + + E LVR+ K + + NMQL++ V+P Y
Sbjct: 310 LGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMVDVMPLWYEKPY 369
Query: 434 FDVPSIINLVDI 469
V I DI
Sbjct: 370 IKVQRIFETCDI 381
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 172
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 173 -LAEQYGFDGIDLSWQ 217
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 44 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 223
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 224 KRKPKK-IRSSIGSFWHSIKKT 286
KP K +++ F +KK+
Sbjct: 5275 LHKPTKCFEATLVEFSKDMKKS 5296
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 308 DKESEHREGFT---ALV-----REMKQALNVKPNMQLVISVLPNVNCSIYFDVPSIIN 457
+KE+ H EGF+ ALV +E+++ L V+P + +++ + Y D+P +IN
Sbjct: 139 EKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTKWIQSYRDLPLMIN 196
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 344 LVREMKQALNVKPNMQLVISVLPNVNCSIYFDVPSIINLVDI 469
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 128 ESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW-HSIKKTFGTTPV 304
+ P ++ N A L + D + +P P+ IR +GS W +++K
Sbjct: 569 QCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASE 628
Query: 305 DDKESEHREGFTAL 346
D K + H E T +
Sbjct: 629 DKKNAGHVEKETTI 642
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 5 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 112
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 299 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNCSIYFDVPSI 451
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,963
Number of Sequences: 37544
Number of extensions: 209999
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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