Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N04
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 28 1.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 1.8
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.3
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 2.3
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 27 3.1
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 26 4.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 26 5.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 5.3
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 7.1
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 7.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 9.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.3
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 366 KATNLGITDSSIWQMFFC-PVHGLFIATYKPDEKSFLYKNGQIEPITELADTRTRLIAVG 542
K+T++ +D S+ + PV+G T+ PD K L + DT+T L+A
Sbjct: 362 KSTSVEDSDGSVRLLSHSGPVYG---TTFSPDNKYLLSCSEDASARLWSVDTKTALVAYK 418
Query: 543 EHHDIIFANSSGVFGY 590
H ++ + G FG+
Sbjct: 419 GHTGPVWDVAFGPFGH 434
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 276 NGMANAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITD-SSIWQMFFCPVHGLFIATYK 452
+G ++ S +HK+ G V +D T K +TD + IW + F + +A +
Sbjct: 629 SGYISSFVSDEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHVDFDAMR--CVAAVQ 686
Query: 453 PDEKSFL 473
D++++L
Sbjct: 687 RDDQAYL 693
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 342 YTYDYTTKKATNLGITDSSIWQMFFCPV-HGLFIATYKPDEKSFLY 476
+ Y+ +T++ +L TDS +W+ F P G+ + + D +Y
Sbjct: 439 WNYEKSTEEPEHLITTDSPVWKARFTPFGDGVILMPQRGDNSVHMY 484
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 81 IVIRNNNYEKQV-LKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 257
I+++ NY+ + L++D H Y +D+ + SPE + + ++ + NE+
Sbjct: 292 IILQGTNYDTCLELQADGH--YVRMVDFYGQPRLYIRSPEADSERIINFPEDDPYYNEFD 349
Query: 258 EIAGITNG 281
G+ G
Sbjct: 350 AFLGVVQG 357
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 75 DVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFN 236
D+I N E +L++ LAID + S V KT L+ +FN
Sbjct: 351 DLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAKTALQHEFFN 404
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 589 YPNTPDELAKII--SWCSPTAINLVLVSANSVIGSICPFLYRKD 464
YP TP + +++ + S +N V++ + ++G+ +L RKD
Sbjct: 172 YPCTPKGIMELLKDNKISVAGLNAVVLGRSDIVGNPISYLLRKD 215
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 619 RLKDTFLCMPYPNTPDEL-AKIISWCSPTAINLVLVS 512
R+ + LC Y N P EL AKI P A +VL +
Sbjct: 657 RIPEIILCPIYANLPSELQAKIFDPTPPGARKVVLAT 693
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 229 TSIQKQMN--MEKSPESQMAWLTLWTVSTTKFISEAKMEFTRTITLPRKLQT*VSQTLAY 402
T I++ N +E S E + W ST F S+ + F+ +TL K T +
Sbjct: 661 TKIEELANSDVEPSTEQNIGGDVSWGAST--FQSKPQPSFSFGLTLDDKSNTPGKNFSIF 718
Query: 403 GKCFSAQFMDFSLQHTNLTKNLSYTRTGK 489
GK Q ++ LTK S+ + K
Sbjct: 719 GKTAETQVEQKKPENNVLTKPFSFAPSDK 747
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 76 TLS*FGTTIMKNKFSRATCTILTN*QSTTRPAQYFSVYLPK*TVKLF*NPLTSIQKQMNM 255
T+ F T+MKNKF ST Q FS +L K +L + S Q ++
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFE-YSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349
Query: 256 EKSPE 270
E PE
Sbjct: 350 EIYPE 354
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 144 QLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 278
++++ Y ++ +F ++ ++N VLK + NT+ NEY + I N
Sbjct: 256 RMSLYYDSNELFKKMTDDLN--YVLKFPFDNTRGNEYEKEQKIRN 298
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 143 VRIVHVALENLFFIIVVPNYDNVTFLLISAFRE 45
VR+ AL N F VPNYD+V + + FR+
Sbjct: 290 VRLARPALINAFG---VPNYDSVVPMYTTVFRD 319
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 213 VLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKVYLGGKDGVYTYDYTTK 365
V + Y ++TN+ + G++ +ANA D + +L +DG++ + ++ +
Sbjct: 1278 VSRMNYVASQTNKKVRVLGLSTAVANANDLAN---WLNIRDGLFNFRHSVR 1325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,927
Number of Sequences: 5004
Number of extensions: 58765
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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