Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_N04
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 29 2.4
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 29 4.2
06_01_0137 - 1045301-1047601 29 4.2
06_01_0124 - 958935-959967,959985-961222 29 4.2
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 28 5.5
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 28 7.3
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 27 9.7
04_03_1008 + 21691299-21691413,21691524-21691863,21692344-216924... 27 9.7
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 27 9.7
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 141 YQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDH 311
Y ++D Q ++ +L +G LK N + EYG A + G A ++ ++H
Sbjct: 141 YVSSVDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 24 IFVWLFVFAEGGDKKKCDVI-VIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEV 200
+ + L EG +K VI ++ K L ++V +L +Q F SLS +
Sbjct: 264 VVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFR--KLESQFQCRA-FVSLSQQP 320
Query: 201 NGKTVLKSAYFNTKTNEYGEI 263
+ K ++++ Y EYG I
Sbjct: 321 DVKKIVRNIYCQVSQQEYGNI 341
>06_01_0137 - 1045301-1047601
Length = 766
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 165 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 281
T+ ++ +++ E+ + LK YF+T YG++ I G
Sbjct: 634 TARVYGTMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 672
>06_01_0124 - 958935-959967,959985-961222
Length = 756
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 165 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 281
T+ ++ +++ E+ + LK YF+T YG++ I G
Sbjct: 624 TARVYGAMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 662
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 338 SLHVRLHYQESYKPRYHRL*HMANVFLPSSW 430
S+H+ LH + PR HRL H++ P W
Sbjct: 11 SIHLHLHLHLHHPPRLHRLLHLSTT-SPYPW 40
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 577 PDELAKIISWCSPTAINLVLVSANSVIGSIC-PFLYRKDFSS 455
PDE +K +SW S I L A + IC P + K+F S
Sbjct: 483 PDEYSKPLSWNSRVKIALGSARALEYLHEICSPSIIHKNFKS 524
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 387 TDSSIWQMFFCPVHGLFIATYKPDEKSFLYKNG--QIEPITELADTRTRLIAVGEHHDII 560
+D S+ + C H L +A + L KNG Q EP LA R++ G H D I
Sbjct: 367 SDPSLADIIGCKEHRL-LAREAVRKSLVLLKNGKNQKEPFLPLAKNVKRILVAGTHSDNI 425
>04_03_1008 +
21691299-21691413,21691524-21691863,21692344-21692425,
21692905-21693060,21694171-21694344,21694485-21694556,
21695289-21695360,21695473-21695591,21695692-21695777,
21695867-21695919,21696058-21696150
Length = 453
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 492 EPITELADTRTRLIAVGEHHDIIFANSSGVFGYGMHKKVSFNLGDY 629
E ++ + + LIA G H I ++S ++ YG K GD+
Sbjct: 225 EKVSSVEGEKMVLIACGWRHTITVSSSGSLYTYGWSKYGQLGHGDF 270
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 492 EPITELADTRTRLIAVGEHHDIIFANSSGVFGYGMHKKVSFNLGDY 629
E ++ + + L+A G H I ++S ++ YG K GD+
Sbjct: 225 EKVSSVNGQKMVLVACGWRHTITVSSSGSIYTYGWSKYGQLGHGDF 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,082
Number of Sequences: 37544
Number of extensions: 336808
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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