Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N04
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
           protein R08E3.1b protein.
          Length = 1465

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 81  IVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGE 260
           +++  N  +  V+KS V N ++       ++IF+ LSP VN     + A F    N+  E
Sbjct: 107 VILAENTKDTDVMKSSVDNVFR-----NKNSIFYQLSPFVNSAPPQRYANFFAVLNKCSE 161

Query: 261 IA 266
            A
Sbjct: 162 TA 163


>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
           protein R08E3.1a protein.
          Length = 1512

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 81  IVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGE 260
           +++  N  +  V+KS V N ++       ++IF+ LSP VN     + A F    N+  E
Sbjct: 107 VILAENTKDTDVMKSSVDNVFR-----NKNSIFYQLSPFVNSAPPQRYANFFAVLNKCSE 161

Query: 261 IA 266
            A
Sbjct: 162 TA 163


>Z78415-6|CAH60758.1|  291|Caenorhabditis elegans Hypothetical
           protein C17G1.8 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 30/126 (23%), Positives = 47/126 (37%)
 Frame = +3

Query: 108 KQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMA 287
           K +L S +     L + +  + I  SL  E   + + KS   N  T       G    ++
Sbjct: 75  KSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKLS 134

Query: 288 NAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITDSSIWQMFFCPVHGLFIATYKPDEKS 467
              D +  ++   G D    + Y+     NL   DS      F   +G       PDE+S
Sbjct: 135 LTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAENGTENCGKLPDEQS 194

Query: 468 FLYKNG 485
            LY+ G
Sbjct: 195 LLYQKG 200


>U64853-5|AAB04978.2|  460|Caenorhabditis elegans Hypothetical
           protein K11G9.5 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 368 FLGSVIVRVNSIFASEINFVVDTVHSVSHAICDSGDFS-IFICFCIEVSGF*NSFTVH 198
           F  ++ V +  +    + F+  ++H VS  +     FS IF C C+ V+GF    T+H
Sbjct: 320 FFNTISVGLVGVLLGCLGFIPQSLHYVSVVL-----FSVIFSCLCLNVAGFYKCATLH 372


>Z99710-6|CAB16869.1|  362|Caenorhabditis elegans Hypothetical
           protein F08A8.6 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 110 TSSQERRAQSLPISNRLPDQHNIFQFISRSER*NCSKIRLLQYK 241
           T ++E R +     NRL + H  FQ + R    N  +++ L+Y+
Sbjct: 292 TPAEEARTRIEHYENRLKEMHGEFQHVRREADENREEVQRLRYE 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,276,647
Number of Sequences: 27780
Number of extensions: 324561
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)