Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_N03
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518...    31   0.54 
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741...    29   3.8  
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    27   8.8  

>01_07_0065 -
           40851101-40851247,40851352-40851495,40851781-40851872,
           40851954-40852035,40852127-40852193,40852284-40852375,
           40852470-40852586,40852764-40852881,40852969-40853161,
           40853258-40853339,40853607-40853744,40853829-40854023
          Length = 488

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = -1

Query: 559 YIIFLVLKLIDTNQASNFNIESSEYTIILILITFWVCKISVWCCILVVFYHIVFIGSYI 383
           Y++  VL+++ T  A   +  SS ++I  +  + W+    V CCILV++  +V+ G Y+
Sbjct: 170 YLVVAVLEIV-TKNAKVQDQSSSGFSIFRMYFSQWI----VACCILVIYLSLVY-GIYV 222


>05_06_0144 -
           25973635-25973801,25973878-25973947,25974049-25974190,
           25974647-25974827,25975248-25975443
          Length = 251

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -1

Query: 478 ILILITFWVCKISVWCCILVVFYHIVFIGSYIIIHFYFVY 359
           +++++  WV  +   CC  +  ++IVF+  Y +   Y  Y
Sbjct: 172 LIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKY 211


>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -1

Query: 508 FNIESSEYTIILILITFWVCK----ISVWCCILVVFYHIVFIGSYIIIHFYF 365
           F     +    L+L   W+C+    ISV   I + F+   F+  +++ H YF
Sbjct: 503 FEFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQFFPRFFLLYFLVFHIYF 554


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,963,362
Number of Sequences: 37544
Number of extensions: 205372
Number of successful extensions: 409
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)