Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M24
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    23   3.8  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   5.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   7.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    24   9.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    24   9.3  

>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.0 bits (47), Expect(2) = 3.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 233 QTNKHTHPRTHV 198
           Q  KH HP THV
Sbjct: 43  QAMKHLHPETHV 54



 Score = 20.6 bits (41), Expect(2) = 3.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 83 HPSTHARTHAYTNAR 39
          HP TH   H   N+R
Sbjct: 49 HPETHVPWHRVINSR 63


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 46  LVYACVRACVLGCVLGCV 99
           ++Y C   CVLG ++G +
Sbjct: 208 ILYECTFGCVLGAIIGVI 225


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 201 VCAWVCVFVCLFVK 242
           V  WVCVF C F +
Sbjct: 687 VIIWVCVFTCKFAE 700


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 375 SVETSTTSVGK*VITTVIHRN*PPNPYSSDF 283
           S +T+   +   V+ TV+H+    NP +S +
Sbjct: 42  SRDTANADISSPVVQTVVHKEATENPTASSY 72


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 326 SYIGTNHLTPIVVTSHDLVPLHRHVVASLDKQTNKHTHPRTHVLK 192
           SY G  H     +T   L+      V S     +K+ HPR+H ++
Sbjct: 155 SYCGEGHSKVATITVRRLLEF----VCSCRLPASKYDHPRSHYIR 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,129
Number of Sequences: 5004
Number of extensions: 14420
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)