Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M24
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0389 + 3067808-3069121                                           27   5.0  
07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341     26   8.7  
02_01_0695 - 5202091-5202498,5204103-5204588                           26   8.7  

>12_01_0389 + 3067808-3069121
          Length = 437

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 320 IGTNHLTPIVVTSHDLVPLHRHVVASLDKQTNKHTHPRTHVLKL 189
           +  + L P+V   HDLV     V+A+L+      T  R   ++L
Sbjct: 185 VSADELRPLVADGHDLVDAVTRVMATLEAGDANATRARESAVRL 228


>07_03_1099 + 23945867-23945872,23945951-23946547,23948928-23949341
          Length = 338

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 101 STHPSTHPSTHARTH 57
           +THPS  PST  RTH
Sbjct: 130 ATHPSLSPSTSPRTH 144


>02_01_0695 - 5202091-5202498,5204103-5204588
          Length = 297

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 19  ACVRTCVRALVYACVRACVLGCVLGCVLS 105
           A    C R L+    R C LGC L C+ S
Sbjct: 140 AACEACGRGLLDVAFRFCSLGCKLKCMES 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,580,291
Number of Sequences: 37544
Number of extensions: 92914
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)