Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M23
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 27 0.44
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 1.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 2.4
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 2.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 24 3.1
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 24 3.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 24 4.1
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 24 4.1
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 24 4.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 5.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 23 7.2
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.2
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 23 7.2
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 23 9.6
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 23 9.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 9.6
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.1 bits (57), Expect = 0.44
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 211 NSLPYFPSEHHESQIDFLHPRNFW 140
N Y+PS H + DF H FW
Sbjct: 236 NPKRYYPSYWHSDRADFTHGTMFW 259
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 1.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 234 IHIVRAFKIPSHISPLSTMKARLTSFIR 151
++I+R FK+ S S LS +K L +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 214 QNSLPYFPSEHHESQIDFL 158
+N LP FPS S IDFL
Sbjct: 617 ENILPEFPSNISSSAIDFL 635
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 2.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 178 HGAQRGNMGGNFERAHNMDGLEQ 246
H AQRGNM G E + MD LE+
Sbjct: 954 HLAQRGNMLGGIE--NTMDDLEE 974
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 24.2 bits (50), Expect = 3.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 256 PFGVALNHPYCARVQNSLPYFPSEHHESQIDFLHPRNFWN 137
P+ +AL A +Q + +E +S + FL PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCL-FLLPRNFWN 837
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 24.2 bits (50), Expect = 3.1
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 152 RMKE-VNLAFMVLRGEIWEGI 211
R KE V+LAF++ + + W+GI
Sbjct: 86 RQKEKVHLAFLIQQDDFWKGI 106
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 23.8 bits (49), Expect = 4.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 168 LTSFIRGTSGILEIFFFSVQFR 103
L S +RG SGI +FF ++ +
Sbjct: 548 LLSVVRGKSGIAFLFFMAIMLK 569
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 23.8 bits (49), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 250 GVALNHPYCARVQNSLPYFPSEHH 179
G A HP+ +V +LP F +H
Sbjct: 173 GFAKGHPFLLQVVRNLPRFAFNYH 196
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 53 WSAYCF*L*YQL*LWXNLNCTEKKKISNIPEVPRM 157
++ YC+ L Y + W L E+ S IP+ P +
Sbjct: 334 YNPYCYFLEYAILHWNTLFANEENWDSYIPQDPTL 368
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 217 VQNSLPYFPSEHHESQIDFLH 155
+Q + YF S H+S I+ LH
Sbjct: 879 LQKYIDYFSSHPHDSLINILH 899
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 23.0 bits (47), Expect = 7.2
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -1
Query: 160 LHPRNFWNIGNLLFLGTV 107
+ PR F N GN+ F+ ++
Sbjct: 130 IQPRGFINTGNICFMNSI 147
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 23.0 bits (47), Expect = 7.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 256 PFGVALNHPYCARVQNSLP 200
PFG+ HPY + + ++ P
Sbjct: 162 PFGIQSAHPYISSLNSNYP 180
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 214 QNSLPYFPSEHHESQIDFLHP 152
QNSL P ESQ+ LHP
Sbjct: 187 QNSLEIAPLISPESQLSSLHP 207
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 163 FLHPRNF-WNIGNLLFLGTV 107
+ +PR WNIG ++FL T+
Sbjct: 106 YKYPRTMTWNIGVIIFLLTI 125
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 22.6 bits (46), Expect = 9.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 113 TEKKKISNIPEVPRMKEVNLAFMVLR 190
T KK ++ P+VP+ K+VN V R
Sbjct: 54 TFKKGRNDAPDVPQWKQVNAKNPVAR 79
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 268 LLIHPFGVALNHPYCARVQNSLPYFPSEHHESQID 164
+L+ P + YC +QN LP F ++ + D
Sbjct: 387 ILLLPLTYFPSFSYCLELQNFLPVFNAQDPNLRYD 421
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,124
Number of Sequences: 5004
Number of extensions: 19967
Number of successful extensions: 54
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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