Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M23
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 28 0.89
02_04_0573 + 23985468-23987054 27 1.6
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 27 2.1
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 26 3.6
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528... 26 3.6
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 26 4.8
08_02_0175 + 13772394-13773094,13773329-13773860 25 6.3
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 25 6.3
12_01_0123 + 941923-942648 25 8.3
10_08_0790 + 20586222-20586310,20586718-20586783,20588149-205883... 25 8.3
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 25 8.3
06_03_0013 - 15393830-15394060,15394238-15394672 25 8.3
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 25 8.3
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738... 25 8.3
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 21 IYSNITVKRRYGA-LTAFSCDISFSCGKT*TVPRKRRF 131
+Y T +RR GA L+ +C++S C +PR+ R+
Sbjct: 134 VYQEKTRRRRRGAKLSTATCEVSLPCATMVRMPRRLRW 171
>02_04_0573 + 23985468-23987054
Length = 528
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 LWXNLNCTEKKKIS-NIPEV-PRMKEVNLAFMVLRGEIWEGILNARTIWMV 238
LW + N K+ + NI +V P ++ ++LA + G I ++NA +W++
Sbjct: 245 LWLSDNMLGKEALPPNIGDVLPNLQFLSLARNMFEGHIPTSLINASGLWLI 295
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 92 LWXNLNCTEKKKISNIPEV--PRMKEVNLAFMVLRGEIWEGILNARTI 229
LW N + K NIPEV P VN+A + LR EI G R I
Sbjct: 118 LWSNASTFIHKSPPNIPEVKIPEDLTVNIA-LSLRYEINRGFATLREI 164
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 181 GAQRGNMGGNFERAHNMDG 237
GA GN NFE ++N+DG
Sbjct: 421 GAANGNTFSNFESSYNVDG 439
>05_04_0345 +
20451497-20451740,20452078-20452159,20452837-20452882,
20453669-20454352
Length = 351
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 256 PFGVALNHPYCARVQNSLPYFPSE 185
PFGV LN P +++N P F +
Sbjct: 195 PFGVILNRPLYTKIKNVNPSFQDQ 218
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 92 LWXNLNCTEKKKISNIPEV--PRMKEVNLAFMVLRGEIWEGILNARTI 229
LW N + K NIPEV P VN+A LR EI G R I
Sbjct: 116 LWSNASTFINKSPPNIPEVKIPEDLAVNVA-RSLRFEINRGFATLREI 162
>08_02_0175 + 13772394-13773094,13773329-13773860
Length = 410
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 134 WKSSFSRYSSGFXTAKADI 78
W+SSFSR+ G T + DI
Sbjct: 342 WRSSFSRWDLGKITRRMDI 360
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 195 KYGREF*TRAQYGWFRATPNG 257
KY + + QYGWF PNG
Sbjct: 208 KYFLDAVEKKQYGWFWVCPNG 228
>12_01_0123 + 941923-942648
Length = 241
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 104 LNCTEKKKISNIPEVPRMKEVN 169
L C KKK++ PE+P ++++
Sbjct: 108 LACAPKKKVTKAPELPSRRQLS 129
>10_08_0790 +
20586222-20586310,20586718-20586783,20588149-20588350,
20588491-20588548,20588850-20589052,20589147-20589204,
20589473-20589579
Length = 260
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 152 EELLEYWKSSFSRYSSGFXTAKADI 78
E+L ++W F+ SSG T + D+
Sbjct: 89 EQLKQFWDDEFNAISSGETTIERDL 113
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 25.0 bits (52), Expect = 8.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 257 PIWCCSKPSILCAR 216
P++CCSKP C++
Sbjct: 496 PLFCCSKPKCNCSK 509
>06_03_0013 - 15393830-15394060,15394238-15394672
Length = 221
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 171 WLSWCSEGKYGREF*TRAQYGWFRATPNGW 260
W+ W G + RA W R TPN W
Sbjct: 156 WIRWHCVGTVAKR---RAWAAWTRRTPNVW 182
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 229 YCARVQNSLPYFPSEHHESQIDFLHPRNFW 140
YC V + Y + + Q FLH +N +
Sbjct: 480 YCTNVMTKVDYLEHDSMDDQALFLHEKNLF 509
>01_07_0294 +
42571700-42573373,42573653-42573720,42573785-42573819,
42573988-42574061,42574491-42574726,42574958-42575044,
42575356-42575455,42575584-42576003
Length = 897
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 164 LPSSEELLEYWKSSFSRYSSGFXTAKADITAKSSKRSISAL 42
+P+ +L+E WK SFS F +A++ ++ K S+ A+
Sbjct: 770 IPAVADLVETWKRSFS-----FRPMQAEVRDEAKKLSLVAI 805
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,129,889
Number of Sequences: 37544
Number of extensions: 120911
Number of successful extensions: 285
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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