Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M16
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206...    27   2.1  
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714...    25   8.6  

>11_01_0277 +
           2060328-2061061,2061360-2061420,2061560-2061679,
           2061947-2062112,2062229-2062635
          Length = 495

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 146 RVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDVTNQI 280
           RVRR+  +    +DG      K  I+GN N      G ++   Q+
Sbjct: 259 RVRREKKQQEARNDGLDAQATKDNISGNNNRDFEQHGVINTFTQL 303


>02_05_0359 -
           28269236-28269541,28270857-28270919,28271439-28271459,
           28271660-28271716,28271789-28271874,28271982-28272039,
           28272176-28272311,28272799-28273073,28273564-28273602,
           28274052-28274143,28274422-28274454,28275041-28275088,
           28275191-28275323
          Length = 448

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 158 AGAPWNWSTAPAVPRTVRC 102
           AG PW W  +PA     +C
Sbjct: 408 AGGPWTWRESPASRAMQKC 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,377,511
Number of Sequences: 37544
Number of extensions: 97828
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)