Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M16
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical ...    27   2.0  
Z81136-4|CAI46577.1|  738|Caenorhabditis elegans Hypothetical pr...    25   8.0  
AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    25   8.0  

>AF025466-2|AAB71033.1|  261|Caenorhabditis elegans Hypothetical
           protein T23F4.1 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 223 WKRKSQAQCSWLR*CH 270
           WKRKS+++C W + CH
Sbjct: 93  WKRKSRSRCEW-KFCH 107


>Z81136-4|CAI46577.1|  738|Caenorhabditis elegans Hypothetical
           protein W02B8.6 protein.
          Length = 738

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 225 PVIGTLTI-APEVPSELIVSSPA 160
           PV+ T  I APEV S+ ++ SPA
Sbjct: 563 PVVNTALINAPEVASQALILSPA 585


>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
           protein Y48G10A.3 protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 158 QAGELTINSDGTSGAMVKVPI 220
           Q   L I+ DGT+G  +KVP+
Sbjct: 233 QRTPLPISRDGTTGVQLKVPV 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,211,669
Number of Sequences: 27780
Number of extensions: 75477
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)