Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M15
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    33   0.014
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    30   0.096
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   2.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   6.3  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    24   6.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   8.3  

>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 33.1 bits (72), Expect = 0.014
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 115 STKPEPERTRRQISLRSSSLNIVNFNQQNI 26
           STK  P+R +RQ+ L+ SS N   FN+ ++
Sbjct: 42  STKKSPKRLKRQVDLQKSSFNDKTFNESDV 71


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 30.3 bits (65), Expect = 0.096
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 242 SALASPKTAIAGPALIMPFLMLRPISSIFLKTFHFGSGA--AETVDKARTR 96
           SA  S   AIA P +I P   +RP+ S+F+K+      A     +D ART+
Sbjct: 194 SATLSGALAIADPNIISPIDSVRPLLSLFIKSITSAISALILSPLDIARTK 244


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 145 SISAQAQPKQSTKPEPERTRRQISLRSSSLN 53
           S++  A   Q +KP PER ++    RSS LN
Sbjct: 405 SVAEGASLAQVSKPLPERLQKDSMRRSSPLN 435


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -2

Query: 293  SQKGLHYFKLKVQLIYPSALASPKTAIAGPALIMPFLMLRPISSIFLKTFHFGSGAAET 117
            ++K L  F  +    Y  A   P TA+     I    +  P + + LKTFHF   AA+T
Sbjct: 1021 TEKQLRSFVDRCWEKYMRAKVEPGTAVGA---IGAQSIGEPGTQMTLKTFHFAGVAAQT 1076


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 317 NTCNLYKYTLLIKKK 361
           NT  +Y YT+L++KK
Sbjct: 152 NTARVYNYTVLLRKK 166


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 82  QISLRSSSLNIVNFNQQNI 26
           Q+   +  LNI+NFN++N+
Sbjct: 417 QVDYANMWLNIINFNEKNL 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,069,056
Number of Sequences: 5004
Number of extensions: 15883
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)