Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M15
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    27   3.0  
AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    26   9.3  

>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 185 LMLRPISSIFLKTFHFGSGAAETVDKARTRA 93
           ++LR IS   L  FHFG+ A+++ D+ +  A
Sbjct: 2   ILLRLISIGVLINFHFGNAASQSTDERKLEA 32


>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 172 PFLQFS*RLSISAQAQPKQSTKPEPERTRRQIS--LRSSSLNIVNFNQQNIALRFIC 8
           P+ Q + +L+IS+    K     EPE     +   L +    +V+FN + +  +F+C
Sbjct: 140 PYDQQACKLTISSWTSSKSDINYEPEHESVNMDNFLPNEEWVVVSFNIKRVEEKFVC 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,898,300
Number of Sequences: 27780
Number of extensions: 90824
Number of successful extensions: 259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)