Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M14
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        46   3e-06
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        33   0.029
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    27   1.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.4  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   4.4  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   5.9  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   7.7  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
 Frame = +3

Query: 9   MINNGTLHYDHDRDGTHTQLAGCEAKFRNYNHDTHISIVYRDDTLIVSTDL--EGKNAWK 182
           M  +G   YD++ DG   ++A C A     N      + Y  +   +  ++  +G +++ 
Sbjct: 150 MKGDGHTPYDYENDGKANEIASCSALNVRGNDYNLGKLKYDKNAKKLRFEIAYQGSSSFI 209

Query: 183 ECLKVENVLLPTGYFFGASATTGDLSDNHDIIAI 284
           +C  +  V LP   F   SA TGDLS++H+I +I
Sbjct: 210 KCFDLNEVELPLTTFMSFSAHTGDLSESHEIASI 243


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 33.1 bits (72), Expect = 0.029
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 180 KECLKVENVLLPTGYFFGASATTGDLSD 263
           K C +V++V+LP GY+FG S+ +    D
Sbjct: 188 KPCFQVKDVILPQGYYFGVSSQSTSAKD 215


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 243 TTGDLSDNHDIIAIRMYELDLLESQKQDED---RSNIIPSAASFEAPRERVEDTK 398
           TTG + +N+D     + ++D L+  K+DED    +N IP  +S     E +E+ K
Sbjct: 272 TTGGIPENND---YTVGKVDTLKVTKEDEDPTTPTNAIPIPSSMSKRDEALENDK 323


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 475  PSCGTRKNRNVLEKDYIECSLIRWLTL 555
            P+   +KNR  LE  Y+   L  W+ L
Sbjct: 2113 PAIFVQKNREALESKYVSAHLHEWIDL 2139


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -2

Query: 292 YILIAIMSWLSL-KSPVVAEAPKKYPVGNRTFSTFKHSFHA 173
           Y L  I SW  L  SP  +          R F TF+ SFH+
Sbjct: 468 YALKNIRSWTKLISSPPKSSISSSILTQQRQFHTFRPSFHS 508


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 177 WKECLKVENVLLPTGYFFGASATTGDLSD 263
           WK  + + N LL     FG+S   GDL D
Sbjct: 99  WKWYITIVNSLLVVCSAFGSSVIAGDLED 127


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 91   LNFASHPANW-VWVPSRSWS 35
            L +AS P NW VW P R WS
Sbjct: 1120 LEYASTPNNWEVWAP-RVWS 1138


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 RMYELDLLESQKQDEDRSNIIPSAASFEAPRERV 386
           R+  LD  +   Q+E   N+  +  S +AP ER+
Sbjct: 173 RLSSLDSSQDSFQEEHPGNVTGTTFSSQAPEERI 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,839
Number of Sequences: 5004
Number of extensions: 44964
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)