Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M14
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0144 - 31969609-31969866,31969961-31970371,31970472-319705...    29   2.0  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           29   3.4  
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333...    29   3.4  
09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273           28   4.5  

>03_06_0144 -
           31969609-31969866,31969961-31970371,31970472-31970542,
           31970637-31970723,31970816-31971389
          Length = 466

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
 Frame = +3

Query: 54  THTQLAGCEAKFRNYNH-DTHISIVYRD---DTLIVSTDLEGKNAWKECLKVEN------ 203
           T  ++A   AK   Y H D H  I++RD     +++  + E K A     K+ +      
Sbjct: 202 TRLRIALGSAKGLAYLHEDCHPRIIHRDIKSANILLDNNFEAKVADFGLAKLTSDNNTHV 261

Query: 204 ---VLLPTGYFFGASATTGDLSDNHDIIAIRMYELDLLESQKQDEDRSNIIPSAASFEAP 374
              V+   GY     A++G L++  D+ +  +  L+L+  ++  +  +   P  ASF   
Sbjct: 262 STRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELVTGRRPIDAGAADHPWPASFMED 321

Query: 375 RERVEDTKPAMS 410
              VE  +PAM+
Sbjct: 322 DSLVEWARPAMA 333


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +3

Query: 192 KVENVLLPTGYFFGASATTGDLSDNHDIIAIRMYE--LDLLESQKQDEDRSNIIPSAASF 365
           K+  +LLP         TTGDL     ++A+ M +  +D +  + +     ++I S AS 
Sbjct: 59  KLAQLLLPGLAAVSIDCTTGDLFRKPSVVAVDMRKEMVDYVTQRSETFISDSLIESEASQ 118

Query: 366 EAPRERVED 392
           +  +E  ED
Sbjct: 119 DEEKEMPED 127


>05_04_0273 +
           19632430-19632762,19633109-19633177,19633318-19633374,
           19633534-19633597,19633887-19634102,19634761-19634803,
           19635267-19635345,19635467-19635559
          Length = 317

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 264 NHDIIAIRMYELDLLESQKQDEDRSNIIPSA 356
           N D+  + +++  L++S ++DED +N  P A
Sbjct: 129 NRDVAKLEVFKKTLMQSLQEDEDPANTTPKA 159


>09_02_0387 - 8375043-8375831,8376483-8376785,8414151-8414273
          Length = 404

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 228 FGASATTGDLSDNHDIIAIRMYELDLLESQKQDEDRSNIIPSAASFEAPRERVE 389
           FG ++T GD S  H+       +  L  +Q       N  P+AAS    R+RV+
Sbjct: 66  FGQASTQGDFSHPHNDFPYAHAQFPLFSTQPPPAAAGNGGPTAASRCGVRQRVQ 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,544
Number of Sequences: 37544
Number of extensions: 305891
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)