Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M14
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...   165   1e-41
Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical p...    81   5e-16
DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like...    81   5e-16
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   4.1  
U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      27   9.4  
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    27   9.4  

>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score =  165 bits (402), Expect = 1e-41
 Identities = 79/180 (43%), Positives = 109/180 (60%), Gaps = 6/180 (3%)
 Frame = +3

Query: 3   SAMINNGTLHYDHDRDGTHTQLAG----CEAKFRNYNHDTHISIVYRDDTLIVSTDLEGK 170
           SAM+++G+LHYDHD+DGTHTQL G    C AKFRN +HDT + I Y  DTL + +D+E K
Sbjct: 168 SAMVSDGSLHYDHDKDGTHTQLGGENTGCTAKFRNKDHDTQVLIRYVGDTLSIFSDIENK 227

Query: 171 NAWKECLKVENVLLPTGYFFGASATTGDLSDNHDIIAIRMYELDLLESQKQDE-DRSNII 347
             W  C+ V NV LPTGY+ G SA TGDLSD HD+++++M+E +    ++  E DR N++
Sbjct: 228 GIWNLCMSVNNVQLPTGYYIGVSAATGDLSDAHDVVSLKMFEQEFAHVERVGEADRRNVV 287

Query: 348 PSAASFEAPRERVEDTKPAMSGI-KTFLSXXXXXXXXXXXXXXXXXWYQKKQERSRKRLY 524
           P A    +PR+  +D +P+  G   T                    ++QKK ER RKR Y
Sbjct: 288 PHAQFTASPRDHTDDARPSSLGWGGTIALVIVGVIVLVGGLGFGFVYFQKKNERQRKRFY 347


>Z81097-10|CAB03169.1|  492|Caenorhabditis elegans Hypothetical
           protein K07A1.8 protein.
          Length = 492

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
 Frame = +3

Query: 3   SAMINNGTLHYDHDRDGTHTQLAGCEAKFRNYNHDTHISIVYRDDTLIVSTD--LEGKNA 176
           S M+N+GT  YDH  DG+   L+ C+  FRN  +   I I Y  + L V  D  ++    
Sbjct: 149 SLMLNDGTRSYDHHTDGSQQILSSCQRDFRNKPYPVRIRIEYLKNVLTVHIDDGMQPTPR 208

Query: 177 WKECLKVENVLLPTGYFFGASATTGDLSDNHDIIAIRMYELDLLESQK 320
           ++ C++ EN+ LP   +FG SA TG L+D+HD++   ++ L   E QK
Sbjct: 209 YELCMRAENIFLPRNGYFGVSAATGGLADDHDVLDFSVFSL-FNEQQK 255


>DQ384615-1|ABD34785.1|  492|Caenorhabditis elegans ERGIC-53-like
           protein protein.
          Length = 492

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
 Frame = +3

Query: 3   SAMINNGTLHYDHDRDGTHTQLAGCEAKFRNYNHDTHISIVYRDDTLIVSTD--LEGKNA 176
           S M+N+GT  YDH  DG+   L+ C+  FRN  +   I I Y  + L V  D  ++    
Sbjct: 149 SLMLNDGTRSYDHHTDGSQQILSSCQRDFRNKPYPVRIRIEYLKNVLTVHIDDGMQPTPR 208

Query: 177 WKECLKVENVLLPTGYFFGASATTGDLSDNHDIIAIRMYELDLLESQK 320
           ++ C++ EN+ LP   +FG SA TG L+D+HD++   ++ L   E QK
Sbjct: 209 YELCMRAENIFLPRNGYFGVSAATGGLADDHDVLDFSVFSL-FNEQQK 255


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 3   SAMINNGTLHYDHDRDGTHTQ 65
           SAM++    HYDHDRDG  +Q
Sbjct: 421 SAMVDAVFKHYDHDRDGFISQ 441


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 482 HDGEHHECYNDNGDGHH*EKRLNSGH 405
           H   HHE +  +GD HH    ++ GH
Sbjct: 632 HHAPHHEHHEHHGDHHHGSHGVHHGH 657


>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 279 AIRMYELDLLESQKQDEDRSNIIPSAASFEAP 374
           A  M E+D+ ES   DED     P A +F AP
Sbjct: 288 AAEMQEMDMEESDSDDEDAVQ-APEAPAFTAP 318


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 279 AIRMYELDLLESQKQDEDRSNIIPSAASFEAP 374
           A  M E+D+ ES   DED     P A +F AP
Sbjct: 288 AAEMQEMDMEESDSDDEDAVQ-APEAPAFTAP 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,482
Number of Sequences: 27780
Number of extensions: 263002
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)