Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M13
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 61 6e-10
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 43 2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 42 5e-04
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 38 0.006
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 29 2.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 2.8
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264... 29 3.8
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 29 3.8
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 29 3.8
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 27 8.7
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +3
Query: 216 HILTVPKRHIEDAKSLLST--DKELVEKMLLVAKEMLIKNNLTVSDARFGYHWPPFRSVK 389
H L +P HI +L T D +LV ML V +++L ++ + RFG+H PPF SV
Sbjct: 58 HYLVIPIEHIPTVNNLQRTTEDHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVD 117
Query: 390 HLHLHTIA 413
HLHLH +A
Sbjct: 118 HLHLHCLA 125
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 114 CIFCNIINKLENTEILYEDDDVCVFRDIKPASRFHILTVPKRH 242
C+FC I+ + LYEDD D KP S H L +PKRH
Sbjct: 73 CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRH 115
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 90 AGTPTRSHCIFCNIINKLENTEILYEDDDVCVFRDIKPASRFHILTVPK 236
A T IF II K + ++YED+ V FRDI P + H+L +PK
Sbjct: 37 ATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK 85
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 117 IFCNIINKLENTEILYEDDDVCVFRDIKPASRFHILTVPKRHIEDAKSLLSTDKE 281
+F II K + ++++D+ V FRDI P + HI+ +PK ++D + LS +E
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPK--VKDGLTGLSKAEE 247
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Frame = +3
Query: 144 ENTEILYEDDDVCVFRDIKPASRFHILTVPKRHIEDAKSLLSTDKELVEKMLLVAKEMLI 323
E+ EIL++D+ VC ++ K + + +++ LST K + E + LV K +++
Sbjct: 87 ESHEILHKDEPVCFSKEQKEHALMSCCAENSTGL-SSQNFLSTPKSIFEDLSLVKKMLML 145
Query: 324 KNNLTVSDARFGYHWPPFRSVKHLHLHTIAP-ESEM----GLIGRMIFKKD 461
+ +++ + S +L I P ++ M + G FKKD
Sbjct: 146 TSCSSMAGGSSTWRHVHVGSAYYLKYQNIYPMQTRMMHTYAVSGSTEFKKD 196
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 185 NTNIVVFVKYFSVFEFINYITEYAV*SGRCTRCHFTLFIYKFRINTK 45
N N V ++ S F+F+ + A+ G+ HFT YK + K
Sbjct: 3352 NPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVK 3398
>12_02_0910 +
24225180-24225415,24225523-24225678,24226387-24226450,
24226738-24226947,24227678-24227866,24228044-24228342,
24228575-24228851,24229045-24229317,24230316-24230549,
24230707-24230856
Length = 695
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 97 VPAVILHYLSINFESILKIYGIVYRIINLS 8
+P+VILH+LS SI+K++ + I++S
Sbjct: 396 LPSVILHFLSSYVPSIMKLFSTMQGFISVS 425
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 28.7 bits (61), Expect = 3.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -3
Query: 219 YEIYSLVLYPEKHKHRRLRKVFQ 151
Y++Y V YP++HKH + +++
Sbjct: 536 YDLYGQVAYPKRHKHSEVPDIYR 558
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 439 PISPISDSGAIVCRCKCFTLRNGGQ 365
P+ PI VC C CF LR+GG+
Sbjct: 10 PLPPILSLSLCVCACSCF-LRDGGR 33
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 219 YEIYSLVLYPEKHKHRRLRKVFQ 151
Y++Y V YP+ HKH + +++
Sbjct: 562 YDLYGQVAYPKHHKHSEVPDIYR 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,273
Number of Sequences: 37544
Number of extensions: 309675
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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