Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M11
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 49 2e-06
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 42 2e-04
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 42 3e-04
10_08_0155 - 15275561-15276199,15277370-15278299 29 2.0
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 4.6
06_01_0013 + 171270-171470,171564-172070,172897-172980 27 6.1
03_02_0886 - 12173913-12174065,12174140-12174685 27 6.1
08_02_1443 + 27128839-27128989,27132064-27132125,27132386-27132430 27 8.1
02_03_0349 + 18010414-18014283 27 8.1
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Frame = +2
Query: 98 PPSTELTQEDEDIAKPEATFRFIVHNISQLKEQVLSPPCYV-RCLPWKILVLIRHTTTPE 274
P +T Q+ ED P + F + + N+S++ + L +V W+IL+ P
Sbjct: 114 PAATVENQQIED--PPISRFTWTIENLSRVSTKKLYSEIFVVGGYKWRILIF------PR 165
Query: 275 RQQQKALGVFLQCNGEGNSP-GWSCYGLGEIKLLSHRSDSAHLCRKLHHMYHCKEDDWGF 451
+ L ++L P GW+ Y + +++ + + ++ H + +E DWGF
Sbjct: 166 GNNVEYLSMYLDVADSAVLPYGWTRYAQFSLSVVNQMHNKFTIRKETQHQFSARESDWGF 225
Query: 452 AHFISWDDLMNP 487
F+ DL NP
Sbjct: 226 TSFMPLGDLYNP 237
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = +2
Query: 98 PPSTELTQEDEDIAKPEAT-FRFIVHNISQLK-EQVLSPPCYVRCLPWKILVLIRHTTTP 271
P + +Q ED P+ + F + + N +++ ++ S P V W++L+ P
Sbjct: 30 PANAAESQPPED---PQTSRFTWTIENFTRINGKKHYSEPFVVGGFKWRVLIF------P 80
Query: 272 ERQQQKALGVFLQCNGEGNSP-GWSCYGLGEIKLLSHRSDSAHLCRKLHHMYHCKEDDWG 448
+ ++L N P GW+ Y + +++ + + H ++ +E DWG
Sbjct: 81 KGNNVDHFSMYLDVADSVNLPYGWNRYAQFSLAVVNQIHPKYTIRKDTQHQFNARESDWG 140
Query: 449 FAHFISWDDLMNP 487
F F+ DL +P
Sbjct: 141 FTSFMPLSDLYDP 153
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Frame = +2
Query: 116 TQEDEDIAKPEAT-FRFIVHNISQLK-EQVLSPPCYVRCLPWKILVLIRHTTTPERQQQK 289
T E + P+ + F + + N +++ ++ S V W++L+ P+
Sbjct: 43 TAESQPAEDPQTSRFTWTIENFTRINAKKHYSDAFVVGGYKWRVLIF------PKGNNVD 96
Query: 290 ALGVFLQCNGEGNSP-GWSCYGLGEIKLLSHRSDSAHLCRKLHHMYHCKEDDWGFAHFIS 466
++L N P GWS Y + +++ + + H ++ +E DWGF F+
Sbjct: 97 HFSMYLDVADSANLPYGWSRYAQFSLAVVNQIQQKYTIRKDTQHQFNARESDWGFTSFMP 156
Query: 467 WDDLMNP 487
+L +P
Sbjct: 157 LSELYDP 163
>10_08_0155 - 15275561-15276199,15277370-15278299
Length = 522
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 78 GKIHHLYLRALNLHKKMKILRNLKPPLDSLYI 173
G +HHL +R+ ++H+ M+ L PL +++
Sbjct: 49 GSLHHLVMRSPSIHRSMRALAEKHGPLMQVWL 80
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 173 NISQLKEQVLSPPCY-VRCLPWKILVLIRHTTTPERQQQKALGVFLQCNGEGNSPGWSCY 349
N+S+L +L+ RC+ WK+LVL+ T + + + G GN +
Sbjct: 1131 NVSELAGPILTERNPDARCICWKLLVLVPPGTMEFTSNYASKWLLKKLMGSGNEDAGLLF 1190
Query: 350 GLGEIKLLSHRSDSAHLC 403
++ + + + S C
Sbjct: 1191 SSADLSIWTKWNSSPDTC 1208
>06_01_0013 + 171270-171470,171564-172070,172897-172980
Length = 263
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 395 HLCRKLHHMYHCKEDDWG 448
HL R+LH++ CKE+++G
Sbjct: 239 HLRRQLHYVRSCKEEEYG 256
>03_02_0886 - 12173913-12174065,12174140-12174685
Length = 232
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 105 LGGKGDGFSPLL-VSIIPAAIMQRLS*SIAHNG 10
LGGKG+G PL SI+ I+ R S IA NG
Sbjct: 20 LGGKGNGNIPLAQSSILRFNILSRKSAEIASNG 52
>08_02_1443 + 27128839-27128989,27132064-27132125,27132386-27132430
Length = 85
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 335 GWSCYGLGEIKLLSHRSDSAHLCRKLHH 418
GW GL I + SHR D H+ +H+
Sbjct: 46 GWWIGGLNSIVMYSHRYDRGHIKFDMHN 73
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 161 FIVHNISQLKEQVLSPPCYVRCLPWKILVL 250
+++HN L+E VL+ +++CLP + L
Sbjct: 1200 YLLHNCHALEELVLTNASHLQCLPQAVTTL 1229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,841,328
Number of Sequences: 37544
Number of extensions: 304987
Number of successful extensions: 829
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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