Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M08
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    30   0.18 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   1.2  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   2.9  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   6.7  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   6.7  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.8  

>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 406 FRRHYPTNGISYAGIDPDERRYTYV 480
           F  H P  GI++ GIDP + RY +V
Sbjct: 126 FSVHQPIFGITFVGIDPVDHRYPHV 150


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 185 PEGTRTQLRALCCRPAPRVTCCYSA 259
           P+ +R  L +LC  PAP V+ C +A
Sbjct: 117 PQKSRESLNSLCHSPAPSVSSCGNA 141


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 373 ITLTDAARKLFFRRHYPTNGISY 441
           ITL++  RK   R H+ +NGIS+
Sbjct: 917 ITLSELERKQLIRVHFLSNGISH 939


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 407 KNNLRAASVSVIPPPNTLK*TTCAGPFLFKIFPTARLTAAGP 282
           KN   A+   +I PP++    + AG     + PT ++TAA P
Sbjct: 323 KNPTDASKTKIIQPPSSYGTGSSAGKTNPPVNPTIKVTAAIP 364


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 453 IDAGVRDPISRIVSPEEQLTRCVRQRDPTTEHFE 352
           I AG++  +  +V+P  +  R   +RD  TE  E
Sbjct: 407 ISAGLKPKVPFLVTPGSEQIRATIERDGITERLE 440


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 283  GPAAVKRAVGNILNKKG-PAHVVHFKVFGGGITLTDAARKLFFRRHYPTNGISYAGIDPD 459
            G  A  + + ++ ++ G P  +  F    G  +L  A + L        +GISY GI  D
Sbjct: 960  GTVATYKDICSLASESGNPDLIYSFLSIAGNSSLWQARKGL-------ASGISYLGIPED 1012

Query: 460  ERRYTY 477
            ++R T+
Sbjct: 1013 QKRKTF 1018


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 87  LVGASPQPDAARCRLDQEMSYAANASSP 4
           L+    QP+A  CRL +E+   + + SP
Sbjct: 460 LINIHAQPNAVYCRLMEEVGMTSKSISP 487


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 86  SSGHPRSLTPRAVGSIRKCRTPPMPPA 6
           S G PR L PR VGS  + R    P A
Sbjct: 236 SLGAPRGLKPRFVGSEIRARDDDSPTA 262


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 231

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 86 SSGHPRSLTPRAVGSIRKCRTPPMP 12
          SS    S +P +  S RK +TPPMP
Sbjct: 4  SSSSSGSSSPASKRSSRKRQTPPMP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,846,998
Number of Sequences: 5004
Number of extensions: 32338
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)