Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M08
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0774 + 24504964-24507459                                         33   0.18 
03_02_0768 + 11015855-11016063,11016285-11016359,11018296-110188...    31   0.72 
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    28   3.8  
07_03_0363 + 17225472-17226778,17226910-17226917,17227313-172274...    28   5.1  
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472...    27   6.7  
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311     27   6.7  
04_04_1629 + 34893836-34893910,34894104-34894349                       27   8.8  
02_05_0319 - 27872601-27874457                                         27   8.8  

>06_03_0774 + 24504964-24507459
          Length = 831

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 98  LKTGSSGHPRSLTPRAVGSIRKCRTPPMPPAR 3
           L  GS    RS+T +A+  +R  R+PP PP+R
Sbjct: 429 LLAGSGRQERSVTQKALIKVRTSRSPPAPPSR 460


>03_02_0768 +
           11015855-11016063,11016285-11016359,11018296-11018833,
           11019356-11020465
          Length = 643

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 6   GWRHWRRTTFPDRADSARRQAAGMPRRAGLQLSLRSRLSAYSHAARSACAL 158
           G RHW+   FP   + +RR     PRR+ ++ +++ RL A + A   AC +
Sbjct: 212 GRRHWKAGEFPGTQEDSRR-----PRRSPIK-NVKKRLDARAEAKAWACTV 256


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 33  FPDRADSARRQAAGMPRRAGLQLSLRSRLSAYSHAA 140
           FPDR   AR    G+P  AGL  SL +RLS  ++ A
Sbjct: 412 FPDRPP-ARFNYTGVPLTAGLGTSLGTRLSKIAYNA 446


>07_03_0363 +
           17225472-17226778,17226910-17226917,17227313-17227488,
           17227822-17227882,17227955-17228053,17228155-17228249,
           17228411-17228482,17228668-17228735,17228934-17229390,
           17229486-17229596
          Length = 817

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 24/74 (32%), Positives = 34/74 (45%)
 Frame = +2

Query: 287 LLLLNEPSEIF*TKRVRHM*FISKCSVVGSR*RTQRVSCSSGDTIRLMGSRTPASIPTKD 466
           L +   P  IF T  V H  FIS   V  S  R +   C SG+  RL+GS + A+    +
Sbjct: 672 LTIWPSPEVIFLTS-VEHSSFISPPPVTASFHRYEL--CFSGEKARLVGSSSNAADAETE 728

Query: 467 DIRMSXTVHNQTNE 508
             + S   H+Q  +
Sbjct: 729 KHQNSSHHHSQNGD 742


>06_01_0653 -
           4720913-4721152,4721898-4721966,4722059-4722124,
           4722814-4722879,4723001-4723162,4723255-4723347,
           4723449-4723541,4723626-4724273
          Length = 478

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 494 CAPXSTYVYRLSSGSMPAYEIP--LVG*CRLKNNLRAASVSVIPPPNTLK*TTCAGPFLF 321
           C P +T  + LS   +P  E+P  L+   +L+N+    S S+  PP  L+  + +G F  
Sbjct: 66  CLPYNTQAHPLSGQILPKGELPNNLLDLQQLQNSSNLRSNSI--PPGVLQCNSTSGTFDA 123

Query: 320 KI 315
           K+
Sbjct: 124 KL 125


>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
          Length = 705

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 111 SGERAEDRLVGASPQPDAARCRLDQE--MSYAANAS 10
           +G   +DR V A PQP  A    D    + YAANA+
Sbjct: 102 TGANGQDRTVAAPPQPAVAAAMRDDGNFVLYAANAT 137


>04_04_1629 + 34893836-34893910,34894104-34894349
          Length = 106

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -3

Query: 174 PIR*SQGHRQSERRDCMLIDESGERAEDRLVGASPQPDAARCRLDQEMSYAANASSPD 1
           P+R  Q  R ++  D     E    A D +V A+P  DA     D+  + AA A++ D
Sbjct: 44  PLRKDQLVRLNKYDDLEEFAEDEVAAADEVVAAAPADDAGAAADDEGAAPAAGAAADD 101


>02_05_0319 - 27872601-27874457
          Length = 618

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 253 LGSENTEALTGPAAVKRAVGNILNKKGPAHVVHFKVFG 366
           LG ++ +     AA+   V N + ++GP  V   +VFG
Sbjct: 521 LGRDSADRTRAEAALASKVANAVGREGPDRVERCEVFG 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,767,118
Number of Sequences: 37544
Number of extensions: 277834
Number of successful extensions: 910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)