Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M07
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.037
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 1.1
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 1.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 5.7
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.9
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 9.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.9
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 9.9
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.037
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 6 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 140
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 135 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 311
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 312 V 314
+
Sbjct: 500 L 500
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 291 AGVALDNVNGHGVSLTDTHIPG 356
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 7 CSGRSSFYCLSLCASAFKAD 66
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 4.3
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 298 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 122
TP + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 121 SSGSS 107
S S
Sbjct: 359 KSAKS 363
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 319 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 173
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 322 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 167
+PF S P PS+ LV P LT+ + G L+ A +PS S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 223 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 119
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 223 SLPAKGTLTPAPEVPSE 173
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 413 VVIVVEEIHFAGSCHLVSEPG 351
+V + +IHF+G+C+ V+ G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,277
Number of Sequences: 5004
Number of extensions: 45790
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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