Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M06
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    28   1.2  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.6  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    26   4.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   6.3  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 92  DAAVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPE 199
           D  VE+ DAA E  ++ E K+   KKS +KK + P+
Sbjct: 29  DGKVEENDAAEEGASNGEKKKKKKKKS-SKKKKTPQ 63


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 454 CVVLSGRFFRFSWWG 410
           CVV +G    FSWWG
Sbjct: 750 CVVYTGGSSNFSWWG 764


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 68 KKKIRNKELKLQHVLRT 18
          KKK++NKE+ LQ +L T
Sbjct: 46 KKKLKNKEIDLQAILTT 62


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 98  AVEKQDAAPEEVTSTEVKE--SPIKKSPTKKTEVPESN 205
           AV++    P+   + + KE  S +  SPT+K++  E+N
Sbjct: 538 AVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENN 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,201
Number of Sequences: 5004
Number of extensions: 35579
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)