Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M04
(247 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 41 3e-05
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 40 6e-05
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 0.80
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 25 1.1
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 25 1.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 25 1.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 1.4
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 24 3.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 24 3.2
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar... 23 5.6
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 5.6
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 22 9.8
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 22 9.8
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 22 9.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 22 9.8
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 40.7 bits (91), Expect = 3e-05
Identities = 17/42 (40%), Positives = 30/42 (71%)
Frame = +1
Query: 4 AGLIGLAISYALSMTSMLSNVLNSFTETEREMIAVERVGEYI 129
+GL+GL++SYA+ +T L+ V+ + E +++VER+ EYI
Sbjct: 1158 SGLVGLSLSYAVQITQSLTFVVRQSVDVETNIVSVERMLEYI 1199
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 39.5 bits (88), Expect = 6e-05
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 7 GLIGLAISYALSMTSMLSNVLNSFTETEREMIAVERVGEYI 129
GL+G ++SYA+ +T LS ++ + E ++VER+ EYI
Sbjct: 1161 GLVGFSLSYAIQITQGLSFIVQQSVDAENNTVSVERILEYI 1201
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 0.80
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -3
Query: 122 SPTRSTAIISRSVSVNEFRTLLNIDVIDS-AYDIASPIR 9
S ++ + II RSV +++ + L N ++IDS AYD S +R
Sbjct: 637 SASQLSMIIERSVELSKHKRL-NKELIDSMAYDCVSNLR 674
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 163 CKSHRPPYGFVVYIPRR--VRQRSSLAPFP 80
CK +P +G + ++PR+ RQR + FP
Sbjct: 4 CKFEQPRHGSLGFLPRKRASRQRGKVKAFP 33
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 1.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 163 CKSHRPPYGFVVYIPRR--VRQRSSLAPFP 80
CK +P +G + ++PR+ RQR + FP
Sbjct: 4 CKFEQPRHGSLGFLPRKRASRQRGKVKAFP 33
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 1.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 55 LSNVLNSFTETEREMIAVERVGEYIQ 132
L+ +++SFT E + +AV EY+Q
Sbjct: 37 LTQIIHSFTPQELQSLAVNGESEYLQ 62
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 116 TRSTAIISRSVSVNEFRTLLNIDVIDSAYDIASPIRPA 3
++ TA+ S VS EF TLL+ + D+ ++ + PA
Sbjct: 766 SKPTAVASIKVSGTEFSTLLHGNDDDAFFEYLKSLGPA 803
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +1
Query: 31 YALSMTSMLSNVLNSFTETEREMIAVERVGEYIQQTHMAVDATYKHY 171
Y ++ L+++ N+F E + E G+Y + + +T + Y
Sbjct: 38 YKQTLNDRLTSLKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTEEDY 84
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 129 YIFPDAFDSDHLSLRFRERVQNIT 58
Y+ + FDSD+LS V+N+T
Sbjct: 435 YLTQENFDSDNLSESLDNSVENLT 458
>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 768
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +3
Query: 6 GSDWARDIICAVNDIDVK*CSELVHGNGARDDRCRTRRGIYT 131
G RD+ C + D+ + HG G + C+ GI T
Sbjct: 347 GEQILRDVYCQLPSYDLIVPHLIEHGLGTLRETCKLTPGIPT 388
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 89 SVSVNEFRTLLNI 51
S++VNEFRT+ NI
Sbjct: 167 SLAVNEFRTIQNI 179
>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 112
Score = 22.2 bits (45), Expect = 9.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 183 LHRNVMFVSRIDRHMGLLYIFPDAFDSDHLSLRFRER 73
+ +NV F + +D FPD DSD L+F R
Sbjct: 32 IRKNVRFQTEVDE-------FPDFDDSDSDELQFENR 61
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 22.2 bits (45), Expect = 9.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 82 ETEREMIAVERVGEYIQQTHMAVDATYKHYVSM 180
+ E E I ERV EY ++ A +K V++
Sbjct: 101 DPEAERIKAERVAEYNKKKAAKPKAVHKSLVTL 133
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 66 SELVHGNGARDDRCRT 113
+EL + NG R+ RCRT
Sbjct: 99 NELGYLNGGREYRCRT 114
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 22.2 bits (45), Expect = 9.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 7 GLIGLAISYALSMTSMLSNV 66
G++GLA A+ + M SNV
Sbjct: 2834 GMLGLATKPAIGLLDMTSNV 2853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,411
Number of Sequences: 5004
Number of extensions: 12792
Number of successful extensions: 39
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 43306998
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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