Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M03
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.6  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    26   3.7  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   6.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.5  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/64 (31%), Positives = 24/64 (37%)
 Frame = -1

Query: 560 PSRTSDNFQLGGRSDPLTQ*AAVSTYLEENRTPPQ*NPHPDGLLYRTNTIQGYSSSSVRE 381
           P R S N      S P     A ST     + PP   P P  L  RT++     SS    
Sbjct: 193 PRRVSQNSSYASGSVPAA--TAASTASPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSV 250

Query: 380 PPTI 369
           PP +
Sbjct: 251 PPPV 254


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 245 VRLNF*TETRDSKAHLHMRLIPLTP*PYYRVIKFAGFRTMI 367
           V L F    +D K ++  + +PLT  P+  V+K  GFR  I
Sbjct: 265 VLLPFRIAMKDPKTYVKHK-VPLTKIPWLLVLKMYGFRLFI 304


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 151 HINRCIVAVLCSLLHHYTSVIQQY 80
           H+ R  +  +  LL HYT  I QY
Sbjct: 379 HVARLPMETVSQLLSHYTETISQY 402


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 432  QTIWVGILLRWGSILFKIRANCRSLCQRIRS 524
            Q +W+  L  WG++  ++  N + L Q I S
Sbjct: 1078 QQLWLSFLWLWGTLSSRLDYNYKVLLQPINS 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,455
Number of Sequences: 5004
Number of extensions: 57770
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)