Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M03
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0401 - 5260308-5260361,5260457-5260507,5260764-5260809,526...    28   5.0  
01_06_1326 - 36318942-36319037,36319126-36319135,36319298-363193...    28   5.0  
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    28   6.6  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    27   8.7  

>04_01_0401 -
           5260308-5260361,5260457-5260507,5260764-5260809,
           5260884-5260933,5261019-5261062,5261231-5261310,
           5261391-5261461,5261636-5261725,5262367-5262498,
           5263420-5263470,5263615-5263704,5263841-5263878,
           5265882-5266002,5267653-5267960,5268742-5268820,
           5270019-5270113,5270288-5270428,5270792-5270831
          Length = 526

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +1

Query: 205 HCGFENPQTPKICCPPEFLNGNERFESSSAYATNSFDPLTLLPSNQVCGIQNNDRIVGGS 384
           HC + N QT  +  P + L  N+  ES S   + SFD ++++ S +      +++ VG  
Sbjct: 334 HCTWPNFQTDPVNKPIDMLMLNKLKESYSQIRSGSFDAVSVVHSYE------HEKSVGHQ 387

Query: 385 RTEL 396
           +T+L
Sbjct: 388 KTKL 391


>01_06_1326 -
           36318942-36319037,36319126-36319135,36319298-36319368,
           36319594-36319679,36320217-36320295,36320401-36320493,
           36320656-36320678,36320829-36320956,36321182-36321278,
           36321394-36321646,36321744-36321887,36335560-36335811
          Length = 443

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 370 FYHCSESRKLDYSVIRSGGQRN*SHMQMSFRISRF 266
           FY+    R +DY+++R+  Q +  H Q+  R++RF
Sbjct: 76  FYNVVTKRSMDYTMLRNVTQES-HHWQVRVRVTRF 109


>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 418 LVRYNKPSGWGFYCGGVLFSS 480
           +++ NK +GWG+  GG+L +S
Sbjct: 564 IIKENKLAGWGYSAGGLLVAS 584


>11_01_0466 +
           3607947-3610608,3610725-3611018,3611494-3611895,
           3611984-3612217,3614113-3614138,3614446-3614633,
           3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 22  MKILNANKYIITCLFLFTFHIAVSQRCNGGANCIAL 129
           MK+  A+ +++  LF   FH AVS     G + +AL
Sbjct: 1   MKVTTASGHLLLVLFASIFHPAVSSISGNGTDRLAL 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,562
Number of Sequences: 37544
Number of extensions: 379412
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)