Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_M02
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   2.9  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.9  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.8  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    26   5.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.1  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   6.7  

>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 531 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 385
           +L HV + GT+SV++   R I Q F  +CF      V  + E +F   RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 480 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 379
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 193 DGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHAATLTKTHIPG 372
           D +SGA++ V  T          GS+  T+ +     T+G   + V   A T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 393 SRHFVTKPRDMSFCEGRCVSVHVVISQSSCSG 298
           +R F+ +PRD+   +  C S  V I   S +G
Sbjct: 473 NRQFLFRPRDVGKLKSECASTAVSIMNPSLTG 504


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 DNVNGHAATLTKTHIPGFGDKMTAAGKVNL 411
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 502 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 600
           G+G   +F DK G    A     F++ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 274  LTNQMKLGAATAGLAYDNVNGHAATLTKTHIPGFGDKM 387
            +T+  +  A    LA  N+ G  + +  TH+PG G  +
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,853
Number of Sequences: 5004
Number of extensions: 57686
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)