Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M02
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 0.98
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.3
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 29 2.3
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.3
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 29 4.0
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 4.0
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 5.2
01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341... 28 5.2
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 28 6.9
04_03_0913 + 20777859-20780309 28 6.9
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 6.9
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 9.2
09_03_0172 - 13072575-13073800,13075919-13076054 27 9.2
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 27 9.2
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 27 9.2
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 423 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 554
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 528 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 412
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 354 CEGRCVSVHVVISQSSCSGSQLHLVSEIYGAKGTEPVIFVSSY 226
C G C ++ VI + C + ++ VS+IYG + + S+Y
Sbjct: 813 CGGLCPGLNTVIRELVCGLAHMYNVSKIYGIQNGYKGFYSSNY 855
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 423 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 554
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 61 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKV 222
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 59 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 151
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 166 AGAPWSWPTAPADPHIVQCSNQALQRARTG 77
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>01_06_0646 -
30832201-30832838,30833643-30833838,30833975-30834126,
30834258-30834303,30834992-30835216,30835374-30835414,
30835705-30835834,30835951-30836019,30836254-30836307,
30836389-30836547,30836854-30836991,30837079-30837141,
30837225-30837264,30837369-30837415,30838062-30838373
Length = 769
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 354 CEGRCVSVHVVISQSSCSGSQLHLVSEIYGAKGTEPVIFVSSY 226
C G C ++ VI + C S ++ V++I+G + + S+Y
Sbjct: 169 CGGLCPGLNTVIRELVCGLSHMYNVNDIFGIQNGYKGFYSSNY 211
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 150 LQGAPASGCTNCQLRRHLRCYGQGTYN 230
L G P G N + +LRCYG +Y+
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYGSLSYH 328
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 423 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 554
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 172 PLAGAPWSWPTAPADPHIVQCSNQALQR 89
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 546 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 442
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 594 QRVVITIKDIGVSGGRRCTNLVLEHVV 514
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +1
Query: 97 EPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVP-ITGNENHRLSA-LGSV 270
+P +++ + E + VR++ G + +VP I G L+ LG
Sbjct: 109 KPNEILKKTSGRSETPLHEAVRQRCERKIEELKGKDSGLARVPDINGMSPLYLAIPLGYR 168
Query: 271 DLTNQMKLGAATAGLAYDNVNG----HAATL 351
D+ +++ L A L+YD NG HAA L
Sbjct: 169 DIVDKLTLTFGDANLSYDGPNGQNVLHAAAL 199
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 335 PFTLS*ANPAVAAPNFIWLVRSTEPRALSL*FSF-PVIGTLTIAPEVPSELTVSAPACRR 159
P TL +PA AA + IW +P + SF P + APE P L + A R
Sbjct: 426 PKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAAFSR 485
Query: 158 T 156
+
Sbjct: 486 S 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,819,633
Number of Sequences: 37544
Number of extensions: 420583
Number of successful extensions: 1097
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -