Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M02
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z48055-4|CAA88132.2| 301|Caenorhabditis elegans Hypothetical pr... 28 4.7
AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical... 28 4.7
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 6.2
AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical ... 28 6.2
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 27 8.2
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 27 8.2
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 27 8.2
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 27 8.2
>Z49132-7|CAA88986.1| 403|Caenorhabditis elegans Hypothetical
protein ZK666.7 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 274 LTNQMKLGAATAGLAY--DNVNGHAATLTKTHIPGF 375
L +MK+ A A +AY DNVNG L++ PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215
>Z48055-4|CAA88132.2| 301|Caenorhabditis elegans Hypothetical
protein T07A5.2 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 471 IWQVFSGECFGTEIVVVVMEEIYFTGSRHFVTKPRDMSFCEGRCVSVHV 325
+W VF +C G +V+ + +++ +R F+ K RD G C VH+
Sbjct: 148 LWSVFV-DCIGVGVVIATV--LWWVSNR-FLRKVRDQDVEWGYCFDVHL 192
>AL117204-13|CAB55128.1| 286|Caenorhabditis elegans Hypothetical
protein Y116A8C.22 protein.
Length = 286
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 174 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 257
CT CQ HL+C G + W SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 435 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 542
QCQ + AKY Q+C+ + H Q WC
Sbjct: 25 QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59
>AF016425-6|AAY86242.1| 104|Caenorhabditis elegans Hypothetical
protein F59A7.11 protein.
Length = 104
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 46 LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 204
L++ LL + V+ PG + ED + R RR G TV +DG++
Sbjct: 4 LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 133 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 312
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 68 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 127
Query: 313 LAYDNVNGHAATLTKT 360
L YD + G ++ T
Sbjct: 128 LPYDPMTGRLSSSVPT 143
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 133 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 312
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325
Query: 313 LAYDNVNGHAATLTKT 360
L YD + G ++ T
Sbjct: 326 LPYDPMTGRLSSSVPT 341
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 133 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 312
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 334 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 393
Query: 313 LAYDNVNGHAATLTKT 360
L YD + G ++ T
Sbjct: 394 LPYDPMTGRLSSSVPT 409
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 133 PEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 312
P + A++ VRR + TS M +P + LGS+ + + L ++A
Sbjct: 266 PPRLASATVRRTESFNSAPGVSTSAPMYTLPRSSTAVPPPDILGSIPYSARDPLMRSSAD 325
Query: 313 LAYDNVNGHAATLTKT 360
L YD + G ++ T
Sbjct: 326 LPYDPMTGRLSSSVPT 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,522,844
Number of Sequences: 27780
Number of extensions: 341883
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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