Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_M01
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 38 0.005
03_05_0294 + 22855503-22855946,22856346-22856399 31 0.70
11_02_0012 - 7346282-7347136,7347234-7347593 30 1.2
11_01_0771 + 6453130-6454488 29 2.1
01_01_1152 + 9170628-9171899 29 2.1
09_02_0462 + 9583558-9584910 28 3.7
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 28 3.7
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 28 5.0
12_01_0714 + 6223269-6226250 27 6.5
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 27 6.5
02_04_0513 - 23569212-23569675,23569759-23569801,23569888-235700... 27 6.5
01_06_0824 - 32243495-32244319,32244449-32244859 27 6.5
04_03_0980 + 21406822-21409496,21410322-21410376 27 8.7
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 37.9 bits (84), Expect = 0.005
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Frame = +1
Query: 169 GEDKNVVSSPLGAMFLLSLYREGAGKQSQEEITNLLGGAKYISPVNKYSSLSRQF----- 333
G +NV SPL LSL GAG +++++ + LGG ++ ++ Q
Sbjct: 32 GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADA 91
Query: 334 SGMNPDFFTMANKMYVGNQYTLNEWF-TITARQYESEIDTIDFK 462
SG A+ ++V +L + F + +Y++E ++DF+
Sbjct: 92 SGAGGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDFQ 135
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 30.7 bits (66), Expect = 0.70
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = +1
Query: 181 NVVSSPLGAMFLLSLYREGAGKQSQEEITNLLG--GAKYISPVNKYSSLSRQF-----SG 339
NV SPL LSL GAG +++++ +LLG G ++ ++ Q S
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 340 MNPDFFTMANKMYVGNQYTLNEWF-TITARQYESEIDTIDFKDTKKAADLYQSVGKR 507
A+ +++ + +L + F + +Y++E ++DF+ TK D + + R
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDFQ-TKVLRDKQKEIESR 160
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 136 SLKLLKEAYTSGED--KNVVSSPLGAMFLLSLYREGAGKQSQEEITNLLGGA 285
+L+L K G++ +NVV SP+ L+L GA + +E+ LLG A
Sbjct: 15 ALRLAKRLADDGDNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAA 66
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 91 RDYERTALGDAIDKASLKLLKEAYTSGEDKNVVSSPLGAMFLLSLYREGAGKQSQEEITN 270
R + A+ + +++L + +N+ SPL LSL GA + +EI
Sbjct: 8 RRHRHRAISGGLTALAVRLADRLGAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILA 67
Query: 271 LLGGA 285
+LG A
Sbjct: 68 VLGAA 72
>01_01_1152 + 9170628-9171899
Length = 423
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 169 GEDKNVVSSPLGAMFLLSLYREGAGKQSQEEITNLLG 279
G+ +N + SPL L+L +GA ++Q E+ LG
Sbjct: 56 GQGRNFIVSPLSFHAALALVADGARGETQRELLGFLG 92
>09_02_0462 + 9583558-9584910
Length = 450
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 100 ERTALGDAIDKASLKLLKEAYTSGEDKNVVSSPLGA 207
ER G+A D+ KL KEA G K SS GA
Sbjct: 166 ERLKEGEAADEEMKKLKKEAKKKGASKESTSSKSGA 201
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 109 ALGDAIDKASLKLLKEAYTSGEDKNVVSSPLGAMFLLSLYREGAGKQSQEEITNLLGGAK 288
A GD+ A LL E Y +S LGA+F +S GAG S +LG A
Sbjct: 14 AAGDS-GAAETSLLPERYAGAGTPAAAASVLGAVFNVSTSVVGAGIMSIPAAMRVLGVAP 72
Query: 289 YISPV 303
++ V
Sbjct: 73 TVALV 77
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -3
Query: 269 LVISSWLCLPAPSL*RDSKNIAPNGDDTTFLSSPDVYASLRSFREALSMASPR 111
LV+S+ C P P+L R +AP D +L PD A R AL + S R
Sbjct: 242 LVVSASRCFPIPNLFRCRDEVAPR-DGDVWLYRPDADALRRDL--ALPVGSCR 291
>12_01_0714 + 6223269-6226250
Length = 993
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 QFSGMNPDFFTMANKMYV---GNQYTLNEWFTITARQYESEIDTIDFKDTKKAADLYQSV 498
Q ++P F + + ++ GN +++++ IT + +E+ +D DT A ++ S+
Sbjct: 84 QAGSVDPALFRLTSLKHLNLSGNDFSMSQLPVITGFEQLTELVYLDLSDTNIAGEVPGSI 143
Query: 499 GK 504
G+
Sbjct: 144 GR 145
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 GGAKYISPVNKYSSLSRQFSGMN-PDFFTMANKMYVGNQYTLNE 405
GG+ S + +S+S FSGMN P F+ Y +Q T+ E
Sbjct: 1000 GGSSPESTGSVETSISSHFSGMNYPSLFSSKPSGYGASQQTIRE 1043
>02_04_0513 -
23569212-23569675,23569759-23569801,23569888-23570000,
23570099-23570158,23570472-23570541,23570887-23570951,
23571548-23571685,23571764-23573015
Length = 734
Score = 27.5 bits (58), Expect = 6.5
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Frame = +1
Query: 118 DAIDKASLKLLKEAYTSGEDKNVVSSPLGAMFL-LSLYREGAGKQSQ-EEITNLLGGAKY 291
DAI K +LK+ T + N+ SP+ A+ L + Y + K I N L Y
Sbjct: 159 DAIFKQCDAILKKLMTQ-KCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSY 217
Query: 292 ISPVNKYSSLSRQFSGM---NP------DFFTMANKMYVGNQYTLNEWFTITARQYESEI 444
SP + + FS NP D+ NKM+ T+ + A + E+
Sbjct: 218 TSPSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIATEAHVEV 277
Query: 445 DTIDFKDTK 471
D D K K
Sbjct: 278 DRADSKRRK 286
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 169 GEDKNVVSSPLGAMFLLSLYREGAGKQSQEEITNLLGGA 285
G DKN+ SPL L+L GA ++ ++I LG A
Sbjct: 29 GGDKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPA 67
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 161 IHPVKTRMWCRLHWVRCSYCPSTE 232
I P+ WC L W R CP E
Sbjct: 671 ITPLPGGQWCCLKWCRIERCPKIE 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,191
Number of Sequences: 37544
Number of extensions: 339192
Number of successful extensions: 806
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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