Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L24
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   0.76 
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    27   1.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   5.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   5.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.1  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   7.1  
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.4  

>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 381 TKERMKRGRNRGHIYQDLTVFICSGKVFNFS 473
           TKER+KRG+   +I ++ T       VFNFS
Sbjct: 37  TKERLKRGKRFNNISKERTKGKGGNPVFNFS 67


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 110 YKESGISLKNHNLKTNEHGTFRIARGIFR 196
           Y  +  +  +H++  NEHGT  +  G++R
Sbjct: 612 YLYTSYNASSHDIDFNEHGTMVLGSGVYR 640


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 229 IGLFSFYLSIYS*VRFFFSYNKNKRLSFFIIQLFFLG*VYNKILYVLFYSLL 384
           + LF   L  +  + FF S++ +    FF+ Q+F +      IL+ LF+  L
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFL 161


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
            Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 386  RTYETRAKPRAHISRLNCFHLFGESLQ 466
            RT ++ +    HI RLN FH   ESL+
Sbjct: 927  RTPDSSSIHLPHIERLNLFHTKSESLE 953


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = -2

Query: 499 DGEMVYVLSL-KLKTFPEQMKTVKS*YMCPRFRPRFIRSLVVSKKVHIIFYCIPNLKKTI 323
           + E +YVL L  L T  +QMK   S        P   R  +V+  V      IPN++  +
Sbjct: 698 ESEPMYVLPLYSLLTTEDQMKVFDS-------SPEGHRMCIVATNVAETSITIPNIRYVV 750

Query: 322 E**KMKVFCFCYRRKKNVLKSKWINK 245
           +  K K   +  +      + +WI+K
Sbjct: 751 DCGKAKERVYNEKTSVQKFEVRWISK 776


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 64  SGRTTRCAIIASNKYIQGKWN 126
           SG TTR     S K+IQ  WN
Sbjct: 405 SGMTTRFTYTISGKHIQVPWN 425


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 212 IYFWIPSAFFHFIYPFTLKYVFF 280
           I  W+P    H+  PF + ++ F
Sbjct: 147 ILAWVPYGVMHYSAPFIISFILF 169


>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 283 SYNKNKRLSFFIIQLFFLG*VYNKILYVLFYSLLKN 390
           SY+K+KRLSF++     +  V + I+ +      KN
Sbjct: 185 SYSKSKRLSFWLQLGMIIAVVVSFIVMIFILQFTKN 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,187
Number of Sequences: 5004
Number of extensions: 43975
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)