Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L24
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259...    27   7.2  
02_05_0222 - 26941005-26942702                                         27   7.2  
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523...    27   9.5  

>07_03_1324 -
           25825153-25825197,25825705-25825785,25825907-25825967,
           25826005-25826060,25826171-25826239,25826366-25826473,
           25826555-25826635,25826795-25826951,25827060-25827177,
           25827285-25827339,25827779-25827814
          Length = 288

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 467 IEDFPRTNENS*VLIYVPAVSPAFHTFF 384
           I+ FPR  EN      V  +SPAF  FF
Sbjct: 106 IDGFPRNEENRAAFENVTKISPAFVLFF 133


>02_05_0222 - 26941005-26942702
          Length = 565

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/40 (45%), Positives = 23/40 (57%)
 Frame = -1

Query: 146 GYGSSKRFHFPCIYLFEAMMAQRVVRPDSV*IAGSIPTYA 27
           GY  S R     I LF+ M+A+ V RPDS  +A  +P YA
Sbjct: 284 GYTVSGR-EKKAIELFKRMIAESV-RPDSATMASILPAYA 321


>06_01_0718 +
           5233030-5233062,5233329-5233383,5233543-5233660,
           5233746-5233902,5234033-5234113,5234213-5234320,
           5234448-5234483
          Length = 195

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 467 IEDFPRTNENS*VLIYVPAVSPAFHTFF 384
           I+ FPR  EN  V   V ++SP F  FF
Sbjct: 105 IDGFPRNEENRVVFESVISISPEFVLFF 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,963,555
Number of Sequences: 37544
Number of extensions: 231606
Number of successful extensions: 390
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)