Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L21
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    31   0.11 
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    28   0.58 
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    27   1.0  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   1.3  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   2.3  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   4.1  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   4.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   5.4  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   5.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.1  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    24   9.4  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    24   9.4  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    24   9.4  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    24   9.4  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 339 YYLHDYSLNAHYYYHHLT 392
           +Y   YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 267 ICKWKDSTRSCVIRELQSFGQYAKFHRY 184
           +C+  DSTRSCVI +  S   Y+    Y
Sbjct: 366 VCECMDSTRSCVINDDVSSDDYSDLFSY 393


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 290 VEYYCLALPLPKRFYVLLLT*LQFKCPLLLSSS----DLQQVARRRCSSSIKR 436
           V Y C    + K +Y  +L   + +CP++++S     D++ VA    S+ IKR
Sbjct: 124 VVYVCERKFIRKEYYFAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKR 176


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 138 GYAIPPIYEVLPEYFNNGEILHTAQRI 218
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 267 ICKWKDSTRSCVIRELQSFGQYAKFHRY*NI--PVKPHILEE*RNLLSQNDEC 115
           IC W   T+S    E +     AK+HR+ +I   V+ H   E   L S +D+C
Sbjct: 207 ICLWDVQTQSFTSSETKVISPIAKYHRHTDIVNDVQFHPQHE-ALLASVSDDC 258


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 206 CPKDWSSRITHDRVLSFHL 262
           CPK WS  I H R  SF +
Sbjct: 501 CPKVWSKIINHPRFESFDI 519


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 243 EYYPSTYKWDNSVVIRSNTTVW 308
           + YP+ + W  + +IRSN   W
Sbjct: 205 QQYPAAFLWSLATLIRSNGIFW 226


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 417 HRLLATCCKSDDDNNSGHLNCNHV 346
           H L+    K+DDD ++ HL  +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 321 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 410
           Q+A + Y  HD +L  H Y H   +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 195  ILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASMSY 341
            I H  Q IG    + + +  S Y W ++  +  N ++    C    +SY
Sbjct: 1299 ISHMLQHIGQRAFQTLIHGRSPYTWKSASQVSYNASLLINWCHQKGISY 1347


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 YYPSTYKWDNSVVIRSNTTVWHYHCQSASMS 338
           Y P+TY      +++  TT ++Y+  SAS S
Sbjct: 43  YTPATYLSSVPTLLKRATTSYNYNTSSASSS 73


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 6   FNVLYSAKDYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRS 128
           F +++S  DY  FY  TV  KD     L  ++     +H++
Sbjct: 654 FRIIFSNGDYIDFYAETVGEKDEWMSTLRQHLGQCSMVHKN 694


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 258 WKDSTRSCVIRELQSFGQYAKFHRY*NIPVKPHILEE 148
           W  +T SC++ +      YA FH   +IP   H L +
Sbjct: 738 WMIATTSCMLAQFALHSPYAFFH---DIPSISHFLNK 771


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
 Frame = +3

Query: 171 PEYFNNGEILHTAQRIGVHGS------RMIEY----YPSTYKWDNSV 281
           PE F+ G+IL      GVH +      +++EY    Y S   WD +V
Sbjct: 604 PESFSKGDILLGLASDGVHSNGYSLVRKIVEYSDLEYTSVCPWDKNV 650


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 231 SRMIEYYPSTYKWDNSVVIRSNTTVWHYHCQSASMSYYLHDY 356
           +R+++Y P+T     SV+I  +  V H+H      S+ +H +
Sbjct: 87  TRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRF 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,299
Number of Sequences: 5004
Number of extensions: 41355
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)