Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L21
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    31   0.43 
04_04_1360 + 32889597-32890343                                         30   0.99 
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    28   4.0  
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410...    27   7.0  
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665...    27   7.0  
03_01_0201 - 1592180-1592218,1592517-1592602,1592966-1593064,159...    27   7.0  

>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 30  DYDTFYKTTVYMKDRVNQDLYIYVLSTLHIHRSDLEG 140
           +YD F +TT    + V  D Y  VL +  I+R+D EG
Sbjct: 16  EYDKFIRTTDRKHEAVVNDFYSRVLDSGDIYRADYEG 52


>04_04_1360 + 32889597-32890343
          Length = 248

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +3

Query: 189 GEILHTAQRIGVHGSRMIEYYPSTYKWDNSVVIRSN--TTVWHYHCQSASM 335
           G  L  A+R G H          ++ WD+S+V+ S+  + V H+H + A++
Sbjct: 22  GRTLAVAERDGTHDPATGRALTGSWLWDSSLVLASHLASCVHHHHLRGATV 72


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 TLHIHRSDLEGYAIPPIYEVLPEYFNNGEILHTAQ 212
           T+ +  SD E  A P     LP+  NN  +L++ Q
Sbjct: 382 TMRVFESDFEAKAAPEFGNTLPKSSNNNSMLNSEQ 416


>06_01_0579 +
           4099039-4099086,4099798-4099848,4100151-4100286,
           4100287-4100401,4100496-4100528,4101037-4101166,
           4101663-4101751,4102042-4102148,4102238-4102309,
           4102384-4102764,4104907-4105064,4105581-4105674,
           4106082-4106089,4106297-4106387,4107136-4107289,
           4108257-4108377,4108468-4108551,4108946-4109065,
           4109181-4109393,4109482-4109544,4109668-4109783,
           4110132-4110190,4111126-4111445
          Length = 920

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 303 VWH---YHCQSASMSYYLHDYSLNAHYYYHHLTYNK 401
           VWH   + C + +   Y +++S++ ++ YH   Y +
Sbjct: 577 VWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKE 612


>04_03_0256 -
           13564070-13564456,13564543-13565299,13565734-13566535,
           13566884-13566917
          Length = 659

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 16  CIPLKTTTHSIKPQYT*KTVLTRTFTYMSSALYTFIVLT*KVTLFLQYMRFYRNISITVK 195
           C+P   T       YT + + T+T      A    ++L   V +++Q  R YR     + 
Sbjct: 297 CLPQSATYSLFFCPYTKQKLQTKTILVSILAAIGALILVVVVAIYVQKRRKYRERDEELD 356

Query: 196 FCILP 210
           F I+P
Sbjct: 357 FDIMP 361


>03_01_0201 -
           1592180-1592218,1592517-1592602,1592966-1593064,
           1593131-1593232,1593398-1593525,1593602-1593693,
           1593798-1593869,1593964-1594032,1594116-1594199,
           1594292-1594407,1594752-1594875,1594947-1595053,
           1595725-1595875
          Length = 422

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 332 RSALAMVVPNSSIRPNNNTIIPFVSGRIVL 243
           RSA+ +V P++ + P+++ I+   SGR+ L
Sbjct: 87  RSAIPLVKPHNFMHPDDHLILEDESGRVTL 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,691
Number of Sequences: 37544
Number of extensions: 244870
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)