Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L19
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    28   0.21 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.37 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   1.1  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   1.1  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   1.5  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   2.6  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    24   3.5  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    24   4.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    24   4.6  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    23   6.1  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    23   6.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    23   8.0  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    23   8.0  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    23   8.0  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    23   8.0  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    23   8.0  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 28.3 bits (60), Expect = 0.21
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +2

Query: 80  LPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVNGLP 259
           LPE+E E T  ++ G+G P K   K T+      E   E    ++    +T+P  ++ L 
Sbjct: 427 LPEEERE-TYTLEEGLGLPSKSIYKKTIKLVYTSEHAEEMFKALERMPCLTLPLVISRLE 485

Query: 260 APKVVW 277
                W
Sbjct: 486 EKNEEW 491


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 9   TETLKTVSPATIEPQASVFSSRQHSQKTRANTLAKSTMESANPKSTL 149
           T +  T+S ++  P +S FSS   S K+ ++  +  +  S+   STL
Sbjct: 337 TSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 68  FKTTLPEDEGEYTCEVDNGVGKPQK--HSLKLTVVSAPKYEQ-KPEKVIVVKHGQDVTIP 238
           F+T LPED  ++       +G+PQK  H++ L+  +  + +Q  PE+   +  G  +  P
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPEEDERLLEGFFLHGP 160

Query: 239 C 241
           C
Sbjct: 161 C 161


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 274 DDFGRWQTVHLARNRDILSVFHNDHLFRLLLVLRCTDYSQ 155
           D  GRW  ++    ++   V  N H    + V  C  Y++
Sbjct: 225 DFIGRWDLIYKTETKEFEGVIRNKHRKDAVDVTECVGYAK 264


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 38  HNRTSGKRLLFKTTLPEDE--GEYTCEVDNGVGKPQKHSLKLTVVSAP 175
           +N  SG  L   TT+P DE   ++T +VD    +    SL L + S+P
Sbjct: 305 NNNKSGDSLEMSTTIPSDEENEDFTSKVD--AMEIHSGSLPLNIDSSP 350


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +2

Query: 41  NRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKY 181
           NRTS     F TTLP    E+T E  N   +  K  LK  +    K+
Sbjct: 786 NRTSRYMHTFDTTLPMQNDEFTDESVNFENR-WKQELKTPISRFSKF 831


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 18  LKTVSPATIEPQASVFSSRQHSQKTRAN--TLAKSTMESANPKST 146
           L+ V+PA I PQ S+      S   R    T+AK     AN  S+
Sbjct: 339 LRFVNPAIISPQTSMLLDSCPSDNVRKTLATIAKIIQSVANGTSS 383


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 23  DRITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV 202
           D+I     T+  +L     LP+    +T +  N   +PQ   +K    ++ K + + +KV
Sbjct: 169 DKILDELDTTRSQLHSIIKLPDRSSSFTLQCINESVRPQSTKVKEEATTSSKGKDEEKKV 228

Query: 203 IVVK 214
             V+
Sbjct: 229 STVE 232


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 NGVGKPQKHSLKLTVVSAPKYEQKPEK 199
           + VGK Q H+ K   +  P+ +QK EK
Sbjct: 421 SSVGKEQNHTEKQVAIETPE-QQKVEK 446


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 113 VDNGVGKPQKHSLKLTVVSAPKYEQKPE 196
           + N  G    +SL L   S PK++ +PE
Sbjct: 285 LSNATGSALFNSLLLVADSCPKFQWRPE 312


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 133 FADSIVDFASVFALVFWECCLEEKTL 56
           FA  I+ F SVFA   W C  + K +
Sbjct: 668 FAVGILLFTSVFAGALWWCLHQPKRM 693


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 244 LARNRDILSVFHNDHLF 194
           L  NR ++ V HN HLF
Sbjct: 787 LMENRTVILVTHNVHLF 803


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 235 NRDILSVFHNDHLFRLLLVLRCTDYSQFQR 146
           N D++ +      +R LL   C + SQF R
Sbjct: 492 NEDLMEIADKRPSYRQLLYNCCVEISQFSR 521


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 148 FEIDCSQCTEVRAEA*KGDRCETRT 222
           F++ CS C E+   A +  R ET +
Sbjct: 30  FKVQCSGCREIHDNAIEISRSETHS 54


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 161 VVSAPKYEQKPEKVIVVKHGQDVTIPC 241
           V   PK   K  +  +  H +D+++PC
Sbjct: 376 VCVTPKQSTKESERFISSHVEDLSLPC 402


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  ITRHNRTSGKRLLFKTTLPEDEG 97
           I+R  +T+ K  L +  LPEDEG
Sbjct: 641 ISRTWKTAHKNKLQRGALPEDEG 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,624
Number of Sequences: 5004
Number of extensions: 22425
Number of successful extensions: 99
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)