Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L19
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 30 0.23
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 28 0.93
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 27 1.6
05_03_0483 + 14585581-14587977 26 3.7
02_01_0759 - 5628913-5630870,5631023-5631047 26 3.7
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 26 5.0
04_01_0266 - 3563075-3563109,3563405-3564754,3564862-3564965,356... 26 5.0
02_05_0975 + 33227431-33227730,33228556-33228636,33228883-332296... 26 5.0
11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427... 25 6.5
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 25 6.5
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 25 6.5
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 25 6.5
05_05_0278 - 23786507-23786875,23787191-23787315,23787499-237876... 25 6.5
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 25 6.5
09_04_0203 - 15556064-15556561,15557537-15557581,15557852-155582... 25 8.7
06_03_0700 + 23650275-23650299,23650381-23652350 25 8.7
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 25 8.7
02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923... 25 8.7
01_06_1086 - 34421837-34422311,34422426-34422612,34423162-344232... 25 8.7
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 131 KPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVNGLPAP 265
+P +H ++ + +P ++ E + + HG D + C G PAP
Sbjct: 77 QPLEHGVEDEIDGSPYHDALGEHYVGILHGVDASPACSRTGAPAP 121
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 28.3 bits (60), Expect = 0.93
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +1
Query: 61 SSLQDNTPRRRGRIHLRSRQWSRQTPKALFEIDCSQCTEVRAEA*KGDRCETRTGCH--- 231
S + DN PR G W RQ+ K + I S T+ + + G+ + R
Sbjct: 445 SKVSDNPPRLGGVRSRNQPNWWRQSNKTIPRIGLSSSTDSKPDF-SGNDAKVRNLIEELK 503
Query: 232 -DSVQGERSASAQSRL 276
DS + +RSA+ + R+
Sbjct: 504 SDSAEVQRSATGELRI 519
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 27.5 bits (58), Expect = 1.6
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 26 RITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 205
RI R R +RL +P ++T +D +G ++ LK A + +K I
Sbjct: 56 RIQRQRRVLKQRL----KVPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKKPI 111
Query: 206 VVKHGQD 226
VVK+G D
Sbjct: 112 VVKYGLD 118
>05_03_0483 + 14585581-14587977
Length = 798
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 101 YTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTI 235
Y E+DNG K S L++ +++ + E + V+HG V++
Sbjct: 481 YRGEIDNGTTVAIKRSNPLSLQGVHEFQTEIETLSKVRHGHLVSL 525
>02_01_0759 - 5628913-5630870,5631023-5631047
Length = 660
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 231 VTSCPCFTTITFSGFCSYFGALTTVNFKEC 142
VTSCP T + + + +L ++F++C
Sbjct: 371 VTSCPGVTNLALAAIAKFCPSLRQLSFRKC 400
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 208 NDHLFRLLLVLRCTDYSQFQRV 143
N+H ++L+++L T Y FQ+V
Sbjct: 1753 NEHWWKLMMLLVSTSYQSFQQV 1774
>04_01_0266 -
3563075-3563109,3563405-3564754,3564862-3564965,
3564967-3565421
Length = 647
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/50 (20%), Positives = 26/50 (52%)
Frame = -1
Query: 202 HLFRLLLVLRCTDYSQFQRVLLGFADSIVDFASVFALVFWECCLEEKTLA 53
HL L++ + Y ++ +++ +++ A++ + W C + E+T A
Sbjct: 108 HLQILVVQVLRAGYVLYKHIIIRSEKTVLLLATILMFIVWPCQVHERTWA 157
>02_05_0975 +
33227431-33227730,33228556-33228636,33228883-33229680,
33230829-33231005,33231159-33231274,33231422-33231520,
33231598-33232040,33232147-33232184,33232343-33232600,
33233378-33233525,33233989-33234108,33234884-33234984,
33235090-33235213,33235386-33235498,33236103-33236214,
33236298-33236432,33236527-33236593,33236685-33236741,
33236774-33236900,33237221-33237338,33237418-33237929
Length = 1347
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 2 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGEYTCEVD 118
D++G+PE+ +++ R + + +DE E E+D
Sbjct: 617 DMDGSPEEVVSKSFSNHSGRKRVRVVISDDEAEEAPEID 655
>11_01_0541 +
4275660-4275766,4275856-4275973,4276160-4276386,
4276505-4276729,4276902-4277052,4277139-4277345,
4277442-4277520,4277605-4277723
Length = 410
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 127 RQTPKALFEIDCSQCTEVRAEA*KGDRCETRTGCHDSVQGERSAS 261
+ TPK L S CT++ + K RC ++ C +Q S+S
Sbjct: 82 KPTPKKLVTCADSLCTDLYTDLGKPKRCGSQKQCDYVIQYVDSSS 126
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 110 EVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHGQDVTIPCKVNGLPAPKVV 274
+V++ + Q+ +K V +Q+ ++VIV KHG++ + +V L K++
Sbjct: 806 DVNSSNRRTQEDEIKHVEVETVIMKQQQQQVIV-KHGKEEALAMEVKTLENSKII 859
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 77 TLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKHG 220
T E++GE E D G + S + A + + K KV+ V HG
Sbjct: 146 TAVENDGEEEDEEDADAGSEEDGSRAAKPMMAVRRKNKKGKVVQVGHG 193
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 103 VFALVFWEC-CLEEKTLA*GSIVAGDTVFRVSVHV 2
VF +C CLE+ + G + G+T F +SV V
Sbjct: 106 VFTEFISKCPCLEDLVVEEGGFIGGETGFTLSVEV 140
>05_05_0278 -
23786507-23786875,23787191-23787315,23787499-23787664,
23787844-23787979,23788286-23788378,23788505-23788611,
23788719-23788905,23789616-23789722,23789811-23790065,
23791241-23791306,23791363-23791401
Length = 549
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +1
Query: 46 NLRQASSLQDNTPRRRGRIHL-----RSRQWSR-QTPKALFEIDCSQCTEVR 183
N RQ S ++N P + G + R+ + R QTP LFE +C C R
Sbjct: 65 NTRQHSDRENNMPGKHGNDGMSKDMGRATRLKRLQTPINLFEDECVFCHSFR 116
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 259 WQTVHLARNRDILSVFHNDHLFRLLLVLRCTDY 161
W+ H+AR+R H D L ++L C DY
Sbjct: 209 WRRKHVARDRFGCKKKHYDILRLIVLAFVCLDY 241
>09_04_0203 -
15556064-15556561,15557537-15557581,15557852-15558258,
15558538-15558841,15559421-15560757,15561492-15561750
Length = 949
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 5 VNGNPEDRITRHNRTSGKRLLFKTTLPEDEGEYTCEVDNGV 127
+N ++R N+ +L T+P+D EYTC+ + +
Sbjct: 888 INEQNQERTIDSNQVQNLQL----TVPDDSNEYTCQQEGEI 924
>06_03_0700 + 23650275-23650299,23650381-23652350
Length = 664
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 231 VTSCPCFTTITFSGFCSYFGALTTVNFKEC 142
V+SCP T + + + +L +N K+C
Sbjct: 376 VSSCPGVTDLALASIAKFCPSLKQLNLKKC 405
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 91 RGRIHLRSRQWSRQTPKALFEIDCSQCTEVRAEA*KGD 204
R +++ + SR+ PKAL C+ E++ + KGD
Sbjct: 189 RKEVYMEAANRSRE-PKALTRCGCNALFEIKLDKKKGD 225
>02_02_0348 -
9233032-9233154,9233233-9233311,9233387-9233511,
9233597-9233734,9233802-9233993,9235269-9237209
Length = 865
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 91 RGRIHLRSRQWSRQTPKALFEIDCSQCTEVRAEA*KGD 204
R +++ + SR+ PKAL C+ E++ + KGD
Sbjct: 54 RKEVYMEAANRSRE-PKALTRCGCNALFEIKLDKKKGD 90
>01_06_1086 -
34421837-34422311,34422426-34422612,34423162-34423291,
34423485-34423720,34423804-34423961,34424048-34424128,
34424216-34424281,34424364-34424432,34424722-34424866,
34425645-34426138,34426244-34426811,34429529-34429574
Length = 884
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 77 TLPEDEGEYTCEVDNGVGKPQKHSLKLTVVSAPKY 181
T+ DE Y C V+ G G P +L+L + P Y
Sbjct: 145 TVAPDEFIYVCLVNFGSGTPFISALELRQLDDPMY 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,227,098
Number of Sequences: 37544
Number of extensions: 156997
Number of successful extensions: 460
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -