Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L18
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1092 + 34469732-34470118                                         33   0.13 
05_06_0011 - 24841453-24841560,24841650-24841715,24841894-248421...    29   1.6  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   4.7  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   4.7  
01_05_0103 - 18137176-18137283,18137375-18137440,18137592-181378...    27   8.3  

>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 443 GAKLASLHPCICTREKDPVCGSDGVTY 363
           G   A L P  C R  DPVCG+DGVTY
Sbjct: 49  GGSEAQLCPVRCFRP-DPVCGADGVTY 74


>05_06_0011 -
           24841453-24841560,24841650-24841715,24841894-24842130,
           24842217-24842333,24842742-24842945,24843025-24843093
          Length = 266

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 337 AHFKRHRLL*VTPSLPQTGSFSRVHIHGCKLASLAPLAFAIMFHLQR 477
           +H  +  LL   P L +TG  + V +HG K +++     A +FHL+R
Sbjct: 9   SHRAKRELLKHAPKLVETGKKTLV-LHGTKTSAVLNSVLADLFHLKR 54


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245  CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 346
            CS G S   P + Y R  RC++ CS L   + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 455 ANARGAKLASLHPCICTREK 396
           ANA  + ++SLHP  CTRE+
Sbjct: 490 ANAVNSTISSLHPVQCTRER 509


>01_05_0103 -
           18137176-18137283,18137375-18137440,18137592-18137828,
           18137914-18138159,18138483-18138686,18138781-18138852
          Length = 310

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 349 RHRLL*VTPSLPQTGSFSRVHIHGCKLASLAPLAFAIMFHLQR 477
           +  LL   P L +TG  + + +HG K +++     A +FHL+R
Sbjct: 14  KRELLKHAPKLVETGKKTLI-LHGTKTSAVLNSVLADLFHLKR 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,457,777
Number of Sequences: 37544
Number of extensions: 207360
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)