Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L18
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    41   4e-04
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    40   0.001
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    40   0.001
AL032621-2|CAA21491.2|  147|Caenorhabditis elegans Hypothetical ...    28   4.3  
U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine rece...    27   7.5  
AY204175-1|AAO39179.1|  238|Caenorhabditis elegans nuclear recep...    27   9.9  
AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical ...    27   9.9  
AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -1

Query: 416 CICTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGPC 291
           C C     PVCG+D VTY+NLC L+C   +   L   + G C
Sbjct: 19  CDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTC 60



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLK---CASLSKPSLSIEHTGP-CDNN 282
           C    DP+CG++GVT++N C L+   C S +  ++ + +TG  CD N
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICES-ANSTIEVAYTGMCCDTN 817



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGPC 291
           CT +K P+C SD  TY NLC  +        L +   G C
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKC 629



 Score = 33.5 bits (73), Expect = 0.086
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = -1

Query: 392  PVCGSDGVTYSNLCLL---KCASL--SKPSLSIEHTGPCDN 285
            PVC ++GVT++N+CL+    C  +  +K ++ + + G C N
Sbjct: 931  PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCN 971



 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 422 HPCICTREKDPVCGSDGVTYSNLCLLK 342
           H C  T E DPVC ++G  Y NLC+ +
Sbjct: 117 HNCTNT-EFDPVCDTNGSVYRNLCVFQ 142



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -1

Query: 389  VCGSDGVTYSNLCLL---KC--ASLSKPSLSIEHTGPC 291
            VC S+G T+ N C+    +C   ++S+ +L+I HTG C
Sbjct: 1030 VCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGEC 1067



 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = -1

Query: 419 PCICTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSI-----EHTGPCDNNR 279
           P  C+R+  PVC     T+ NLC  +  + +   L I      +  PC  NR
Sbjct: 372 PRTCSRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPCVKNR 423



 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLK---CA--SLSKPSLSIEHTGPC 291
           C +  DPVC +   T+ N+C  K   C    +    + I H+G C
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFKFFACKINKIDGSVIDIAHSGAC 301



 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLC 351
           C  +  PVC S G T+ N+C
Sbjct: 818 CPSDFSPVCDSKGSTHQNIC 837


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 416 CICTREKDPVCGSDG---VTYSNLCLLKCASLSKPSLSIEHTGPCDNNR 279
           C C  E DPVC  +G    TYSN C+ +CA  +K  L + + G C + R
Sbjct: 25  CSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCSAR 73



 Score = 30.3 bits (65), Expect = 0.80
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLL---KCASLSK--PSLSIEHTGPC 291
           C  E +PVC   G T++N C     KC   ++   SL ++++G C
Sbjct: 125 CPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVC 169


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLK-CASLSKPSLSIEHTGPCD 288
           CT E   VCGSDG TYSN C L+  A +++ ++ +++   C+
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 509



 Score = 35.9 bits (79), Expect = 0.016
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPCD 288
           CT     VCG+DG TY N C LK A+   +  + +   G CD
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCD 364



 Score = 34.7 bits (76), Expect = 0.037
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 389 VCGSDGVTYSNLCLLK 342
           VCGSDG TYSNLC LK
Sbjct: 880 VCGSDGTTYSNLCELK 895



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 419 PCICTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPC 291
           P  C     PVC ++G T+ N C +K  S  +K  + ++H G C
Sbjct: 394 PNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 437



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLKCAS--LSKPS--LSIEHTGPC 291
           C    D VCGSD V+YS+ C L   S  L+K    L +   GPC
Sbjct: 169 CRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPC 212



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 392 PVCGSDGVTYSNLCLLKCAS 333
           P+CGSDG+ Y+N C L   S
Sbjct: 693 PICGSDGIVYNNQCHLNTIS 712



 Score = 30.7 bits (66), Expect = 0.61
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 401 EKDPVCGSDGVTYSNLC-LLKCASLSKPSLSIEHTGPCD 288
           E   VCG+DGVTYS+ C + K A      +     G CD
Sbjct: 547 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 585



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 389 VCGSDGVTYSNLCLLKCASLSK 324
           +CG +GV Y +LC L+ AS  K
Sbjct: 619 ICGENGVLYPSLCHLQLASCQK 640


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLK-CASLSKPSLSIEHTGPCD 288
           CT E   VCGSDG TYSN C L+  A +++ ++ +++   C+
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 517



 Score = 35.9 bits (79), Expect = 0.016
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPCD 288
           CT     VCG+DG TY N C LK A+   +  + +   G CD
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCD 372



 Score = 34.7 bits (76), Expect = 0.037
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 389 VCGSDGVTYSNLCLLK 342
           VCGSDG TYSNLC LK
Sbjct: 819 VCGSDGTTYSNLCELK 834



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 419 PCICTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPC 291
           P  C     PVC ++G T+ N C +K  S  +K  + ++H G C
Sbjct: 402 PNRCEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 445



 Score = 31.5 bits (68), Expect = 0.35
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 410 CTREKDPVCGSDGVTYSNLCLLKCAS--LSKPS--LSIEHTGPC 291
           C    D VCGSD V+YS+ C L   S  L+K    L +   GPC
Sbjct: 177 CRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPC 220



 Score = 30.7 bits (66), Expect = 0.61
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 401 EKDPVCGSDGVTYSNLC-LLKCASLSKPSLSIEHTGPCD 288
           E   VCG+DGVTYS+ C + K A      +     G CD
Sbjct: 555 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 593



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 389 VCGSDGVTYSNLCLLKCASLSK 324
           +CG +GV Y +LC L+ AS  K
Sbjct: 627 ICGENGVLYPSLCHLQLASCQK 648


>AL032621-2|CAA21491.2|  147|Caenorhabditis elegans Hypothetical
           protein Y45F3A.4 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 416 CICTREKDPVCGSDGV--TYSNLCLLKCASLSKPSLSIEHT 300
           C CT+E + V  +DGV  T +  CL+    L  PS+ I +T
Sbjct: 27  CKCTKESETVTCTDGVCETENGSCLM----LDHPSMGIHYT 63


>U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein117 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 214 RMFKIINIQFLMLNFSYILERAL--IFLIKMKNK*YKNVK 101
           ++F ++  QFL L+FS +  RAL    + KM  +  K V+
Sbjct: 251 KLFPVLFFQFLTLSFSMVFLRALEGFIMFKMNERIDKGVR 290


>AY204175-1|AAO39179.1|  238|Caenorhabditis elegans nuclear receptor
           NHR-65 protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 425 LHPCICTREKDPVCG--SDGVTYSNLCLLKCASLSKPSLSIEHTGPCDNNRV*AV 267
           L PC  + E+  VCG   +G+ +       CA+  + + S +    C+N+ + A+
Sbjct: 3   LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFAL 57


>AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3b protein.
          Length = 398

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 425 LHPCICTREKDPVCG--SDGVTYSNLCLLKCASLSKPSLSIEHTGPCDNNRV*AV 267
           L PC  + E+  VCG   +G+ +       CA+  + + S +    C+N+ + A+
Sbjct: 3   LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFAL 57


>AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3a protein.
          Length = 401

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 425 LHPCICTREKDPVCG--SDGVTYSNLCLLKCASLSKPSLSIEHTGPCDNNRV*AV 267
           L PC  + E+  VCG   +G+ +       CA+  + + S +    C+N+ + A+
Sbjct: 3   LEPCSSSPERCKVCGDTGNGMHFGAFTCRACAAFFRRAASRKFLRKCENHLIFAL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,187
Number of Sequences: 27780
Number of extensions: 194532
Number of successful extensions: 438
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)