Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L17
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    62   4e-11
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.66 
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    27   1.5  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       27   1.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   2.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.7  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   6.2  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
 Frame = +2

Query: 161 VKDSFLDVGTFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINADIPFSKRY 319
           V D   DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A I FS RY
Sbjct: 20  VNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFSGRY 73



 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 337 KRYLKKNHLRGTGSELVVSAHDSYELRYFNI 429
           K++LKK+ LR     +V +    YELRY+N+
Sbjct: 79  KKFLKKHSLRDW-LRVVSTKKGVYELRYYNV 108


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 236 NNLGNHVVIARDKTKVAINADIPFSKRYSQIPDPSVTSRKTIFGELAPNWWFLH 397
           N L N+VV+ +D+  +    +  + +   QIP+  + S   +FGE+  N  FL+
Sbjct: 422 NVLANYVVVFKDRL-IFQEINQNWEEHKGQIPENFIFSLLKMFGEMQENQGFLN 474


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 344 TSRKTIFGELAPNWWFLHMT----HMSFATSTSMLIATMKTTRIKLFINKI 484
           TS K +FG L   WW L +T    H +F   T      ++ + + +F +++
Sbjct: 188 TSTKVLFGLLGLWWWMLFVTASFYHTTFEKCTGFFSGILEWSIVYVFSSRM 238


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 133 KGLIFFLQPLPRIWPLLTP 77
           +G I+ LQP P +W L  P
Sbjct: 63  QGFIYLLQPTPELWTLALP 81


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 216 LKLKAKQITWAITLS----SPGTRQKSLSTQTFPSQRGILKYLTQALPQEKPSSGNWLRI 383
           L +K  +I W  +L     S GT   +L  Q    Q  I  Y+   +P  +PS      I
Sbjct: 273 LTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPI 332

Query: 384 GGFC 395
            GFC
Sbjct: 333 RGFC 336


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 215  VKVEGKTNNLGNHVVIARDKTKVAINADIP 304
            +K+ G  NNL +++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = +2

Query: 290 NADIPFSKRYSQIPDPSVTSRKTIFGELAPNWWFLHMTHMSFATSTSMLIATMK 451
           NA IP   +   +PDP  T+  + F  L   +     + +  ATS    + T +
Sbjct: 307 NAPIPLLPKVVSLPDPRFTNVLSAFDALTRTYLLRQNSKVVHATSQKQEMQTSR 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,741
Number of Sequences: 5004
Number of extensions: 37592
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)