Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L17
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal prote... 50 7e-07
CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical ... 30 1.0
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 29 1.8
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 29 1.8
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 29 1.8
AC006666-2|AAK21416.2| 244|Caenorhabditis elegans Hypothetical ... 29 2.4
AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2 ... 27 5.6
AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2 ... 27 5.6
AC084197-3|AAN63427.1| 173|Caenorhabditis elegans Histone h1 li... 27 5.6
AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 li... 27 5.6
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 27 7.4
AF025451-1|AAB71201.1| 610|Caenorhabditis elegans Hypothetical ... 27 9.8
>U58760-2|AAK31460.1| 130|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 22, isoform a protein.
Length = 130
Score = 50.4 bits (115), Expect = 7e-07
Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +2
Query: 161 VKDSFLDVGTFEKYLKERVKVEGKTNNL-GNHVVIARDKTKVAINADIPFSKRY 319
V+D L + E +L E++KV GKT +L N+V + K+KV++ +++PFSKRY
Sbjct: 31 VEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVPFSKRY 84
Score = 31.1 bits (67), Expect = 0.45
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +1
Query: 337 KRYLKKNHLRGTGSELVVSAHDSYELRYFNIN 432
K+YLK+N LR + V+ + +YE+RYF+IN
Sbjct: 90 KKYLKRNSLRDWLRVVAVNKN-TYEVRYFHIN 120
>CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical
protein C42C1.1 protein.
Length = 347
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 483 ILFINSLILVVFMVAISIDVEVAKLI*VMCRNHQF 379
I+FIN + ++ ++V +SID+ + K + + HQF
Sbjct: 26 IIFINIVSILYYLVNVSIDIRIGKFDTNVIKIHQF 60
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 338 SVTSRKTIFGELAPNWWFLHMTHMSFATSTSMLIATMKTTRIKL 469
S S+KT P ++F+H +H +FAT L+ T I L
Sbjct: 273 SENSKKTDTRVQIPIYFFIHSSHSNFATLFKSLLTFFPTNSISL 316
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 12 KMAVTKKPVAKKGQLHQKTGKKGVKSGQIRGKGCKKK 122
K A KKPVAKK +K KK V G+ KK
Sbjct: 115 KAAAAKKPVAKKAATGEKKAKKPVAQKAATGEKKAKK 151
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 12 KMAVTKKPVAKKGQLHQKTGKKGVKSGQIRGKGCKKK 122
K A KKPVAKK +K KK V G+ KK
Sbjct: 115 KAAAAKKPVAKKAATGEKKAKKPVAQKAATGEKKAKK 151
>AC006666-2|AAK21416.2| 244|Caenorhabditis elegans Hypothetical
protein H31G24.3 protein.
Length = 244
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 167 DSFLDVGTFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFSKRYSQIPDPSV 343
D+ + + + +LK V+V+ + +N G + I T V +NA S +PD SV
Sbjct: 72 DATVKIHFEQDWLKGEVQVDSQFSNQGQEIEILNCGTVVILNAFSNSSTFCESVPDKSV 130
>AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 3 SVAKMAVTKKPVAKKGQLHQKTGKK---GVKSGQ--IRGKGCKKKIKPLI*HLMDTPLLR 167
+ K V KKPVAKK +K KK K+G + K KK KP + +P +
Sbjct: 116 AATKKPVAKKPVAKKAATGEKKAKKTTVAKKTGDKVKKAKSPKKIAKPAAKKVAKSPAKK 175
Query: 168 IA 173
A
Sbjct: 176 AA 177
>AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 3 SVAKMAVTKKPVAKKGQLHQKTGKK---GVKSGQ--IRGKGCKKKIKPLI*HLMDTPLLR 167
+ K V KKPVAKK +K KK K+G + K KK KP + +P +
Sbjct: 116 AATKKPVAKKPVAKKAATGEKKAKKTTVAKKTGDKVKKAKSPKKIAKPAAKKVAKSPAKK 175
Query: 168 IA 173
A
Sbjct: 176 AA 177
>AC084197-3|AAN63427.1| 173|Caenorhabditis elegans Histone h1 like
protein 2, isoformb protein.
Length = 173
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 3 SVAKMAVTKKPVAKKGQLHQKTGKK---GVKSGQ--IRGKGCKKKIKPLI*HLMDTPLLR 167
+ K V KKPVAKK +K KK K+G + K KK KP + +P +
Sbjct: 98 AATKKPVAKKPVAKKAATGEKKAKKTTVAKKTGDKVKKAKSPKKIAKPAAKKVAKSPAKK 157
Query: 168 IA 173
A
Sbjct: 158 AA 159
>AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 like
protein 2, isoforma protein.
Length = 241
Score = 27.5 bits (58), Expect = 5.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +3
Query: 3 SVAKMAVTKKPVAKKGQLHQKTGKK---GVKSGQ--IRGKGCKKKIKPLI*HLMDTPLLR 167
+ K V KKPVAKK +K KK K+G + K KK KP + +P +
Sbjct: 166 AATKKPVAKKPVAKKAATGEKKAKKTTVAKKTGDKVKKAKSPKKIAKPAAKKVAKSPAKK 225
Query: 168 IA 173
A
Sbjct: 226 AA 227
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 284 AINADIPFSKRYSQI-PDPSVTSRKTIFGELAPNW 385
A+ P ++R + P + T RKTIFG ++ W
Sbjct: 569 AVRTSTPTTRRTTTTTPRRTTTPRKTIFGRMSDGW 603
>AF025451-1|AAB71201.1| 610|Caenorhabditis elegans Hypothetical
protein C24H12.5a protein.
Length = 610
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 266 RDKTKVAINADIPFSKRYSQIPDPSVTSRKTI 361
R K +V + D PF+ S+ PDP T K +
Sbjct: 65 RQKPQVTFSQDDPFAASISRSPDPLKTPTKGV 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,410
Number of Sequences: 27780
Number of extensions: 209010
Number of successful extensions: 529
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -