Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L17
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    27   0.14 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.25 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.25 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   3.1  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 21  VTKKPVAKKGQLHQKTGKKGVKSGQIRGKGCKKKIKPLI 137
           VTK+P  KK Q  + T  +  K+ +   + C +K+K L+
Sbjct: 37  VTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVLV 75


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 234 VLPSTLTRSFKYFSKVPTSKKLSLTRVCPLNVKL 133
           ++P+   R F   S V  S ++SLT  CP+N+KL
Sbjct: 134 IMPNVYIRIFPNGS-VLYSIRISLTLSCPMNLKL 166


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.25
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 234 VLPSTLTRSFKYFSKVPTSKKLSLTRVCPLNVKL 133
           ++P+   R F   S V  S ++SLT  CP+N+KL
Sbjct: 134 IMPNVYIRIFPNGS-VLYSIRISLTLSCPMNLKL 166


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 TFNGHTLVKDSFLDVGTFEKYLKE 211
           T  GH + K   +D  T EK+ KE
Sbjct: 22  TTTGHLIYKCGGIDKRTIEKFEKE 45


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 TFNGHTLVKDSFLDVGTFEKYLKE 211
           T  GH + K   +D  T EK+ KE
Sbjct: 22  TTTGHLIYKCGGIDKRTIEKFEKE 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,212
Number of Sequences: 438
Number of extensions: 2323
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)