Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L15
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    36   0.005
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    31   0.11 
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.2  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   7.3  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   7.3  

>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +1

Query: 40  DLETFCRDLPKIELHAHLNGSLSQLTMLQLKRYHADK 150
           D+E F   LPK ELH HL G+L     L+LK  H +K
Sbjct: 3   DIERFIEKLPKAELHLHLEGTLE--AELKLKLSHRNK 37


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 34  NMDLETFCRDLPKIELHAHLNGSLSQLTMLQLKR 135
           N+ +  F R LPK E H HL G LS   + +L +
Sbjct: 3   NLPIYNFIRKLPKCEHHVHLEGCLSPDLVFRLAK 36


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 88  HLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQIGS 201
           H N  + +L MLQ+   +A +  +D+  +Y+ +FQ  S
Sbjct: 637 HPNAKVIRLDMLQIAIANAPRQKLDEVVSYWTDFQSNS 674


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 376 KMKYIDSIIQAIQKSSVHLTMTT 444
           + KY+  +I ++QKS VH  + T
Sbjct: 528 QFKYVYDLIDSLQKSQVHFPVLT 550


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 390 RFNHSGHTKVFSPSHHDNTTYYLD 461
           RF H  ++ + + +  DNT  YLD
Sbjct: 75  RFTHHSNSLIHASTKEDNTVRYLD 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,229
Number of Sequences: 5004
Number of extensions: 45111
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)