Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L15
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128... 84 6e-17
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 33 0.11
03_06_0680 - 35497868-35497884,35498058-35501961 29 1.8
03_01_0588 - 4354195-4355184 29 3.2
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636... 28 5.6
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 28 5.6
02_01_0383 + 2776526-2776632,2777579-2777835,2777915-2778366,277... 28 5.6
01_07_0382 + 43188478-43190919 28 5.6
10_01_0168 - 1883380-1883594,1884572-1888325 27 7.4
02_05_1214 + 34976814-34979813 27 7.4
07_03_0229 + 15506772-15508304 27 9.8
07_01_0521 + 3867922-3867967,3868282-3868544,3868680-3868744,386... 27 9.8
>07_03_1571 +
27811510-27811613,27812493-27812563,27812798-27812889,
27812963-27813022,27813130-27813351,27813450-27813526,
27813618-27813687,27813793-27813906,27813985-27814051,
27814259-27814363,27814470-27814594
Length = 368
Score = 84.2 bits (199), Expect = 6e-17
Identities = 42/129 (32%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Frame = +1
Query: 37 MDLETFCRDLPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQ-IGSGDTR 213
M + +C LPK+ELHAHLNGS+ T+L+L + DKG D F++ + + + R
Sbjct: 7 MSMREWCVALPKVELHAHLNGSVRDSTLLELAKQLGDKG-----DIVFEDVKDVIMKNGR 61
Query: 214 NLSDCFQVFSIAHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTPR--DTPYMDKMKY 387
+L +CF++F + H LT+ + +T T +++F + Y+E+R+TP+ + M K Y
Sbjct: 62 SLPECFRLFELYHILTTDHDTVTRITKEVVEDFAMENVVYLEIRTTPKNNEAKGMTKRSY 121
Query: 388 IDSIIQAIQ 414
++++I+ ++
Sbjct: 122 MNAVIKGLK 130
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 33.5 bits (73), Expect = 0.11
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Frame = +1
Query: 88 HLNGSLSQLTMLQLKRYHADKGL-VDKTDAYFDEFQIGSGDTRNLSDCFQVFSIAHALTS 264
HL G+L L L A L DK + DE+ + ++ F ++ S
Sbjct: 436 HLPGTLEMLLRLPCSMESATLSLDFDKGFLHIDEYPPDANQGFDIPSALVTFPEFNSSRS 495
Query: 265 TPEALTMATVMTLQEFQDDGC--CYIELRSTPRDTP 366
PE T+ LQ F++DG Y E+ P TP
Sbjct: 496 YPEGDTLFVSPLLQTFKEDGVVKSYTEVLLVPLTTP 531
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 318 ILEFLQSHNSSHCQCLRSTGKGMSYTEYLETIRQI 214
IL LQ+ N C CLR KGM YL T+R +
Sbjct: 626 ILYHLQTLNLCRCYCLRGLPKGM---RYLTTLRHL 657
>03_01_0588 - 4354195-4355184
Length = 329
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 145 DKGLVDKTDAYFDEFQIGSGDTRNLSDCFQ----VFSIAHALTSTPEALTMATVMTLQEF 312
D G D TDA FD ++ +FS A A+ +T A M L F
Sbjct: 256 DSGSGDDTDALFDALLFADQYNHFNGGAYESLDSLFS-ADAVQTTAAAAAADQGMGLWSF 314
Query: 313 QDDGCCYIELRST 351
DDGCC +++ ++
Sbjct: 315 -DDGCCLVDVEAS 326
>10_08_1003 -
22162526-22163155,22163305-22163448,22163565-22163692,
22163794-22164066,22164416-22164689
Length = 482
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 247 AHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTPRDTP 366
+H L + AT TL F+ DG +E R+T D P
Sbjct: 347 SHVLMELNSSKHTATRTTLPSFKTDGTSLLERRNTKADQP 386
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -2
Query: 379 FYPYMVYHEGCSLVRYNSIHHLGILAES*Q*PLSMPPEYW 260
+ PY VY + S++ +++ H G+ S L +PPE++
Sbjct: 292 YRPYGVYRDARSVLVIHNLAHQGVEPASTYPDLGLPPEWY 331
>02_01_0383 +
2776526-2776632,2777579-2777835,2777915-2778366,
2778845-2779102
Length = 357
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/68 (22%), Positives = 35/68 (51%)
Frame = +1
Query: 61 DLPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQIGSGDTRNLSDCFQVF 240
++P EL + + S ++ +++ + Y + +V + E + + D ++L+ + V
Sbjct: 41 EIPWAELRSMVEPSFAERSLIYHRDYLTNATIVTSSAVNITEQAVLTADGQSLAYDYLVI 100
Query: 241 SIAHALTS 264
+ HALTS
Sbjct: 101 ATGHALTS 108
>01_07_0382 + 43188478-43190919
Length = 813
Score = 27.9 bits (59), Expect = 5.6
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Frame = +1
Query: 64 LPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQIG---------SGDTRN 216
L K +HA L S L+M +A GL+D+ A FDE + SG +N
Sbjct: 366 LAKSGVHADLTAGNSLLSM------YAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQN 419
Query: 217 --LSDCFQVFSIAHALTSTPEALTMATVM 297
+ F VF A P+A TM +++
Sbjct: 420 GRAEEAFLVFKKMQACNVEPDAATMVSLI 448
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 318 ILEFLQSHNSSHCQCLRSTGKGMSYTEYLETIRQIPCVTRSYL 190
IL LQ+ N SHC LR K M Y L + C Y+
Sbjct: 622 ILYHLQTLNVSHCIRLRRLPKDMKYMTSLRHLYTNGCKNLEYM 664
>02_05_1214 + 34976814-34979813
Length = 999
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 121 LQLKRYHADKGLVDKTDAYFDEFQIGSGD 207
++++ HAD VD+ D FD F GD
Sbjct: 870 MEMRLSHADAATVDELDEEFDTFPSSRGD 898
>07_03_0229 + 15506772-15508304
Length = 510
Score = 27.1 bits (57), Expect = 9.8
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 112 LTMLQLKRYHADKGLVDK-TDAYFDEF-QIGSGDTRNLSDCFQVFSIAHALTSTPEALTM 285
+++ +L+R AD + D T Y D ++ G+ +S C++ + A TST TM
Sbjct: 259 ISVRRLRREKADGDVADSATFCYVDTLLELELGEDEMVSLCWEFMNAAAKTTSTALEWTM 318
Query: 286 ATVMTLQEFQ 315
A ++ + Q
Sbjct: 319 ARLVHHSDIQ 328
>07_01_0521 +
3867922-3867967,3868282-3868544,3868680-3868744,
3868828-3868990,3869798-3869946,3870041-3870289,
3870860-3871028,3871110-3871202,3871703-3871952,
3872127-3872217,3872673-3872769
Length = 544
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 127 LKRYHADKGLVDKTDAYFDEFQ---IGSGDTRNLSDCFQVFSIAHALTSTPEALTMATVM 297
+ RY VD ++ YFDE+Q + + R + F+I+ + +P+ + +ATV
Sbjct: 18 IPRYQVGSSKVDTSERYFDEWQKKLPNTDEIRKSKPRSRYFTIS-GVELSPDNMAVATVY 76
Query: 298 TLQ 306
+Q
Sbjct: 77 FVQ 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,369
Number of Sequences: 37544
Number of extensions: 266061
Number of successful extensions: 543
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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