Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_L15
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical p... 83 2e-16
U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical pr... 31 0.54
U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical ... 28 5.0
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 27 8.8
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 27 8.8
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 27 8.8
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 27 8.8
>U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical
protein C44B7.12 protein.
Length = 388
Score = 82.6 bits (195), Expect = 2e-16
Identities = 45/157 (28%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Frame = +1
Query: 40 DLETFCRDLPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQIGSGDTRNL 219
D+ F +++PK+ELHAHL+GSLS T+ + +D+ + + ++++ + N+
Sbjct: 52 DMTEF-KNMPKVELHAHLSGSLSPETIKLIME--SDE---TRAEEIMKKYKLEKPE--NM 103
Query: 220 SDCFQVFSIAHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTPRDTPYMDKMKYIDSI 399
+ F F + HA+ PEA+ +A T++EF++D C Y+ELR++P++T +M Y+
Sbjct: 104 TGVFDCFPVIHAILRKPEAIRIAIRQTIKEFEEDNCVYLELRTSPKETDFMTYEDYLQVC 163
Query: 400 IQAIQKSSVHL-TMTTRLIISXNRNSSIKETDEIVDI 507
I++ + + + T LI+S +R + I+ +
Sbjct: 164 IESFEAAKHEFPRIKTFLIVSLDRRMPFETAAHILGL 200
>U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical
protein C06G3.5b protein.
Length = 349
Score = 31.1 bits (67), Expect = 0.54
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Frame = +1
Query: 61 DLPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQ--IGSGDTRNLSDCFQ 234
+ PK+ELH HL+G++ T++ L + KG+ +E + + + + NLS +
Sbjct: 6 NFPKVELHLHLDGAVRFDTLIDLSQ---QKGIPLAGAKTVEELKKVLVTHEPANLSKVLE 62
Query: 235 VFSI-AHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTP-----RDTPYMDKMKYIDS 396
F I + A+ ++ ++G Y E R +P D P + + +
Sbjct: 63 AFEIFLPVIRGDLAAIERVAYELCEDQHNNGVVYFEGRYSPHLLLCNDYPEVTAAHVVAA 122
Query: 397 IIQAIQKSSVHLTMTTRLIISXNRNSSIKETDEIVDI 507
+ + + + R I+ R K I+D+
Sbjct: 123 VKKGFDRGEKQFGIKARSILCCIRGLDKKFPQLILDL 159
>U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical
protein C06G3.5a protein.
Length = 391
Score = 31.1 bits (67), Expect = 0.54
Identities = 32/157 (20%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Frame = +1
Query: 61 DLPKIELHAHLNGSLSQLTMLQLKRYHADKGLVDKTDAYFDEFQ--IGSGDTRNLSDCFQ 234
+ PK+ELH HL+G++ T++ L + KG+ +E + + + + NLS +
Sbjct: 48 NFPKVELHLHLDGAVRFDTLIDLSQ---QKGIPLAGAKTVEELKKVLVTHEPANLSKVLE 104
Query: 235 VFSI-AHALTSTPEALTMATVMTLQEFQDDGCCYIELRSTP-----RDTPYMDKMKYIDS 396
F I + A+ ++ ++G Y E R +P D P + + +
Sbjct: 105 AFEIFLPVIRGDLAAIERVAYELCEDQHNNGVVYFEGRYSPHLLLCNDYPEVTAAHVVAA 164
Query: 397 IIQAIQKSSVHLTMTTRLIISXNRNSSIKETDEIVDI 507
+ + + + R I+ R K I+D+
Sbjct: 165 VKKGFDRGEKQFGIKARSILCCIRGLDKKFPQLILDL 201
>Z74041-6|CAA98517.2| 337|Caenorhabditis elegans Hypothetical
protein T03F7.3 protein.
Length = 337
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 184 HQSKHQFCPLILCLHDTFSTVA 119
+QS + FC LI+ LH FST+A
Sbjct: 278 NQSANNFCFLIMSLHGFFSTIA 299
>AC006830-1|AAK68610.3| 802|Caenorhabditis elegans Hypothetical
protein ZK105.3 protein.
Length = 802
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 28 F*NMDLETFCRDLPKIELHAHLNGSLSQLTMLQLKRYHADKGLV 159
F MD + + R P + H NG+ SQ+ Q+KR +GLV
Sbjct: 181 FYGMD-QMWPRGFPLEHIEKHTNGNDSQVLCYQMKRAAVQQGLV 223
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 DKMKYIDSIIQAIQKSSVH---LTMTTRLIISXNRNSSIK 483
+K ++DSI I ++ H T ++R IS N N+SI+
Sbjct: 600 EKNDWVDSIFSIIDEAKAHSLTFTSSSRSSISENNNNSIE 639
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 DKMKYIDSIIQAIQKSSVH---LTMTTRLIISXNRNSSIK 483
+K ++DSI I ++ H T ++R IS N N+SI+
Sbjct: 600 EKNDWVDSIFSIIDEAKAHSLTFTSSSRSSISENNNNSIE 639
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 DKMKYIDSIIQAIQKSSVH---LTMTTRLIISXNRNSSIK 483
+K ++DSI I ++ H T ++R IS N N+SI+
Sbjct: 600 EKNDWVDSIFSIIDEAKAHSLTFTSSSRSSISENNNNSIE 639
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 DKMKYIDSIIQAIQKSSVH---LTMTTRLIISXNRNSSIK 483
+K ++DSI I ++ H T ++R IS N N+SI+
Sbjct: 600 EKNDWVDSIFSIIDEAKAHSLTFTSSSRSSISENNNNSIE 639
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 373 DKMKYIDSIIQAIQKSSVH---LTMTTRLIISXNRNSSIK 483
+K ++DSI I ++ H T ++R IS N N+SI+
Sbjct: 600 EKNDWVDSIFSIIDEAKAHSLTFTSSSRSSISENNNNSIE 639
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,726
Number of Sequences: 27780
Number of extensions: 244144
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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