Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_L15
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 211 RNLSDCFQVFSIAHALTSTPEAL-TMATVMTL 303
           RN SD  ++    + LTS P+AL  +A + TL
Sbjct: 428 RNCSDLKELDLSGNELTSVPDALRDLALLKTL 459


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 369 YG*NEIHRFNHSGHTKVFSPSHHDNT 446
           +G + IH   H  H+   +P H  +T
Sbjct: 421 HGHSHIHATPHHHHSHAATPHHQHST 446


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 249 SCPYQYSGGIDNGYCYDSA 305
           S P + SGG++ G+  DSA
Sbjct: 55  SGPEESSGGVELGWFNDSA 73



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 233 KYSV*LMPLPVLRRH*QWXXXXXCKNSK 316
           K +V L+PLP+ R          CK  K
Sbjct: 557 KSTVSLLPLPLARTPSVMSASSTCKKDK 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,982
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)